Mutant fragments of OspA and methods and uses relating thereto

ABSTRACT

The present invention relates to a polypeptide comprising a mutant fragment of an outer surface protein A (OspA), a nucleic acid coding the same, a pharmaceutical composition (particularly for use as a medicament of in a method of treating or preventing a  Borrelia  infection) comprising the polypeptide and/or the nucleic acid, a method of treating or preventing a  Borrelia  infection and a method of immunizing a subject.

RELATED APPLICATIONS

This application is a continuation of U.S. patent application Ser. No. 14/623,681, filed Feb. 17, 2015, which is a continuation of U.S. patent application Ser. No. 13/802,991, filed Mar. 14, 2013 and now issued as U.S. Pat. No. 8,986,704, which claims the benefit under 35 U.S.C. § 119(e) of U.S. provisional application Ser. No. 61/668,627, filed Jul. 6, 2012, the disclosures of which are incorporated by reference herein in their entirety.

FIELD OF THE INVENTION

The present invention relates to compositions and methods for the prevention and treatment of Borrelia infection.

BACKGROUND OF THE INVENTION

Lyme borreliosis, or Lyme disease, is the most commonly reported tick-borne disease in Europe and North America. The disease is caused by the arthropod-borne gram-negative-like spirochete, Borrelia burgdorferi sensu lato (B. burgdorferi s.l.), and is an infection that can involve multiple organs or tissues, resulting in skin, cardiac, musculoskeletal and neurological disorders. In most countries, Lyme borreliosis is not a notifiable disease and no exact data regarding annual incident rates are available. In the United States, the causative agent is B. burgdorferi sensu stricto (B. burgdorferi s.s.) and Lyme borreliosis is localized to north-eastern, mid-Atlantic and upper north-central states. In 2010, a total of about 30,000 cases of Lyme borreliosis were reported for the US to the Centers for Disease Control and Prevention (CDC). In Europe, B. afzelii and B. garinii are the main causative agents of Lyme borreliosis, as well as B. burgdorferi s.s. and B. bavariensis, which contribute to a lesser extent depending on the geographic location. The prevalence of Lyme borreliosis varies considerably in different European countries with an overall increased prevalence from west to east. In much of Europe, the number of reported cases of Lyme borreliosis has increased since the early 1990s (e.g., the Czech Republic, Estonia, Lithuania; see Lyme borreliosis in Europe, WHO report of 2006), and the geographic distribution of cases has also expanded.

In some risk groups, such as farmers, forestry workers, hikers, runners or vacationers, seroprevalence and disease incidence rates have increased, as in children under 15 years of age and adults between 39 and 59, without gender preference. This increased incidence of Lyme borreliosis is linked to changes in forest habitats as well as social factors. Environmental changes, such as forest fragmentation, have led to a sharp reduction of rodent predators such as foxes and birds of prey, which in turn has led to an increase in the mouse population, with a subsequent increase in the tick population. More recently, patchy reforestation has increased the number of deer and thus the number of ticks. Suburban sprawl and the increasing use of woodland areas for recreation such as camping and hiking has brought humans into greater contact with the larger number of tick Borrelia vectors. All of these factors together have contributed to a wider distribution of Borrelia and a higher incidence of Lyme borreliosis.

Antimicrobial agents are the principle method of treatment of Borrelia infection. The antibiotic used depends on the stage of the disease, symptoms, and the patient's allergies to medication. The length of the antibiotic course also depends on the stage of the disease and the severity of symptoms. Early Lyme borreliosis is typically treated with oral tetracyclines, such as doxycycline, and semi-synthetic penicillins, such as amoxicillin or penicillin V. Arthritic and neurological disorders are treated with high-dose intravenous penicillin G or ceftriaxone. Up to 30% of Lyme borreliosis patients do not display the early characteristic symptoms of infection with Borrelia, making diagnosis and treatment problematic. The antibiotic course can be long (up to several months) and sometimes ineffective and is thus debated in the Borrelia field, especially during later-stage disease. Even in the case of effective treatment of Borrelia, patients can be left with debilitating fatigue, pain, or neurological symptoms for years afterwards referred to as post-treatment Lyme disease syndrome. In general, the use of antibiotics can have undesirable consequences, such as the development of resistance by the target micro-organisms. Finally, antibiotic therapy may effectively cure Lyme borreliosis, but provides no protection against subsequent infections.

A monovalent OspA-based vaccine (LYMErix™) was approved and marketed in the USA for the prevention of Lyme disease. However, heterogeneity in OspA sequences across different serotypes in Europe and elsewhere precludes efficient protection with a vaccine based on OspA from a single serotype.

Chimeric OspA molecules comprising the proximal portion from one OspA serotype, together with the distal portion form another OspA serotype, while retaining antigenic properties of both of the parent polypeptides, may be used in the prevention and treatment of Lyme disease or borreliosis (WO2011/143617, WO2011/143623).

X-ray crystallography and NMR analysis have been used to identify immunologically important hypervariable domains in OspA and have mapped the LA-2 epitope to amino acids 203-257 (Ding et al., Mol. Biol. 302: 1153-64, 2000).

Currently, there is no preventative medicament for Lyme borreliosis on the market and thus there is a need in the art for the development of such a medicament that can provide effective protection against a variety of species of Borrelia that are present in the USA, Europe and elsewhere.

SUMMARY OF THE INVENTION

The present invention relates to a polypeptide comprising a mutant fragment of Borrelia outer surface protein A (OspA), a nucleic acid encoding the same, a pharmaceutical composition (particularly for use as a medicament or in a method of treating or preventing a Borrelia infection) comprising the polypeptide and/or the nucleic acid, a method of treating or preventing a Borrelia infection and a method of immunizing a subject.

Efforts to develop a subunit vaccine for prevention of Lyme borreliosis have been focused in large part on the use of borrelial outer surface protein A (OspA) as an antigen. The OspA protein is expressed by Borrelia only when it is in the gut of the tick vector. Thus, OspA antibodies produced by vaccination do not fight infection in the body, but rather enter the gut of the tick when it takes a blood meal. There, the antibodies neutralise the spirochetes and block the migration of bacteria from the midgut to the salivary glands of the tick, the route through which Borrelia enters the vertebrate host. Thus, OspA-specific antibodies prevent the transmission of Borrelia from the tick vector to the human host.

The lipidated form of OspA from B. burgdorferi s.s., strain ZS7, together with aluminium hydroxide was commercially developed as a vaccine against Borrelia (LYMErix™) by SmithKline Beecham, now GlaxoSmithKline (GSK) for the US market. Three doses of LYMErix™ over a period of one year were needed for optimal protection. After the first two doses, vaccine efficacy against Lyme borreliosis was 49%, and after the third dose 76%. However, shortly after LYMErix™ was commercially available, it was withdrawn from the market in 2002. Reasons cited were matters of practical application of the vaccine, for example the need for booster injections every year or every other year, as well as the relatively high cost of this preventive approach compared with antibiotic treatment of early infection. In addition, there was a concern that LYMErix™ could trigger autoimmune reactions in a subgroup of the population due to sequence homology with a human protein, though this was never proven. In addition, cross-protection against other clinically important Borrelia species was not provided by this vaccine.

Accordingly, in one embodiment, it was an object of the present invention to provide an improved vaccine for the prevention of Lyme borreliosis. Preferably, the vaccine is easily produced while being protective, safe and more effective than existing therapies and/or provides protection against more than one Borrelia species.

The problem underlying the present invention is solved by a polypeptide comprising a mutant fragment of an outer surface protein A (OspA), wherein the mutant fragment consists of a C-terminal domain of an OspA protein of Borrelia and differs from the corresponding wild-type fragment by the introduction of at least one disulfide bond.

Surprisingly, it was found that the introduction of at least one disulfide bond in a mutant fragment increases the protective capacity of the polypeptide comprising the mutant OspA fragment relative to a polypeptide comprising the wild-type OspA fragment, as shown in an in vivo model of infection. As shown in the Examples, the introduction of at least one disulfide bond into the B. afzelii OspA C-terminal fragment increased its protective capacity relative to the wild-type OspA fragment without a disulfide bond. Tables 2 and 3 provide data demonstrating the protective capacity of mutant fragments with an introduced disulfide bond (“S2D1-5”) as compared to the wild-type OspA fragment (“S2D0”), as fewer animals were infected after immunization with mutant OspA fragments in comparison to wild-type OspA fragments. Some of the mutant OspA fragments tested provided protection comparable to that conveyed by the positive control antigen, the non-lipidated full-length OspA protein.

DETAILED DESCRIPTION OF THE INVENTION

Accordingly, in a first aspect, the present invention relates to a polypeptide comprising a mutant fragment of an outer surface protein A (OspA), wherein the mutant fragment consists of a C-terminal domain of an OspA of Borrelia and differs from the corresponding wild-type fragment by the introduction of at least one disulfide bond.

The term B. burgdorferi s.l. encompasses at least 13 Borrelia species (Table A-1). These species occur in different geographic regions, and live in nature in enzootic cycles involving ticks of the Ixodes ricinus complex (also called Ixodes persulcatus complex) and a wide range of animal hosts. Four Borrelia species are responsible for the majority of infections in humans: B. burgdorferi s.s., B. afzelii, B. bavariensis and B. garinii. Three other species, B. lusitaniae, B. bissettii and B. spielmanii, have occasionally been detected in humans, but their role in Lyme borreliosis is uncertain at present. New species of Borrelia are still being reported.

TABLE A-1 Principal tick vector Location Pathogenic species (4) Borrelia burgdorferi Ixodes scapularis Northeastern/north- (Borrelia burgdorferi s.s.) central US Ixodes pacificus Western US Ixodes ricinus Europe Ixodes persulcatus Asia Borrelia garinii Ixodes ricinus Europe Ixodes persulcatus Asia Borrelia afzelii Ixodes ricinus Europe Ixodes persulcatus Asia Borrelia bavariensis Ixodes ricinus Europe Ixodes persulcatus Asia Minimally pathogenic or non- pathogenic species (9) Borrelia andersonii Ixodes dentatus Eastern US Borrelia bissettii Ixodes spinipalpis Western US Ixodes pacificus Europe Ixodes ricinus Borrelia valaisiana Ixodes ricinus Europe and Asia Ixodes columnae Borrelia lusitaniae Ixodes ricinus Europe Borrelia spielmanii Ixodes ricinus Europe Borrelia japonica Ixodes ovatus Japan Borrelia tanukii Ixodes tanuki Japan Borrelia turdi Ixodes turdus Japan Borrelia sinica Ixodes persulcatus China

As detailed above, Borrelia outer surface protein A (OspA) is an abundant immunogenic lipoprotein of Borrelia of particular interest because of its potential as a vaccine candidate. OspA of B. burgdorferi s.l. is a basic lipoprotein that has a molecular mass of approximately 30 kDa and is encoded on a linear plasmid. An important aspect of the OspA protein is its N-terminal lipidation; that is, the N-terminal cysteine residue is substituted with fatty acids with a chain length of between C14 and C19 with or without double-bonds, a feature that enhances the immunogenicity of the OspA protein. It has been shown that poorly-immunogenic synthetic peptides induce stronger antibody responses when lipidated; for example, when covalently coupled to Pam₃Cys (Bessler and Jung, Research Immunology (1992) 143:548-552), a fatty acid substitution found at the amino terminus of many bacterial lipoproteins that are synthesized with a signal sequence specifying lipid attachment. Additionally, the Pam₃Cys moiety was shown to enhance immune responses to OspA in mice, partially through its interaction with TLR-2 (Yoder, et al. (2003) Infection and Immunity 71:3894-3900). Therefore, lipidation of a C-terminal fragment of OspA would be expected to enhance the immunogenicity and protective capacity of the fragment.

Analysis of isolates of B. burgdorferi s.l. obtained in North America and Europe has revealed that OspA has antigenic variability and that several distinct groups can be defined based on serology. Anti-OspA mAbs which bind to specific N- and C-terminal antigenic determinants have been reported. Previous studies have shown that the production of antibodies against the C-terminal epitope LA-2 correlates with protective immunity after vaccination with OspA (Van Hoecke et al. Vaccine (1996) 14(17-18):1620-6 and Steere et al., N Engl J Med (1998) 339:209-215). Antibodies to LA-2 were shown to block the transmission of Borrelia from tick to host (Golde et al., Infect Immun (1997) 65(3):882-889). These studies suggested that the C-terminal portion of the OspA protein may be sufficient for inducing protective immunity. Based on information from these and other studies, truncated forms of OspA comprising the C-terminal portion (also referred to herein as “OspA fragment” or “monomer”) were used in the current invention. These truncated forms of OspA proved to be less protective than the full-length OspA protein. Surprisingly, however, it was found in the course of the current invention that the introduction of a disulfide bond in the truncated form (also referred to herein as “mutant OspA fragment” or “mutant fragment”) overcomes this disadvantage. While not being limited to a specific mechanism, it is thought that improved protection is due to increased stability of the OspA fragment, as shown in assays measuring thermal stability.

In accordance with the present invention, the mutant OspA fragment may be derived from any Borrelia species; however, due to their relevance in the medical field, particularly for humans, B. burgdorferi s.s., B. afzelii, B. bavariensis and B. garinii are preferred. In this regard, these four Borrelia species can be further classified according to their OspA serotypes, which have been determined by analysis with monoclonal antibodies specific to the respective OspA protein. Serotypes 1-7, which account for the majority of human Borrelia infections, along with their rates of prevalence, are shown in Table A-2 below.

TABLE A-2 Serotype designation and prevalence of B. burdorferi s.s., B. afzelii, B. bavariensis and B. garinii. Borrelia isolated from human cerebrospinal fluid or skin or from tick vectors were serotyped by probing whole-cell lysates with mouse monoclonal antibodies, each specific to a particular epitope of OspA (as described by Wilske et al., J. of Clin Microbiol (1993) 31(2): 340-350 and presented by Baxter Bioscience at “Climate change effect on ticks and tick-borne diseases”, Brussels, 6 Feb. 2009). OspA serotype Prevalence Strain Seq defined by in human source for ID Borrelia sp. mAb testing disease sequence No: B. burgdorferi s.s. 1 11% B31 20 B. afzelii 2 63% K78 19 B. garinii 3 1.5%  PBr 21 B. bavariensis 4  4% PBi 22 B. garinii 5  6% PHEi 23 B. garinii 6 13% DK29 24 B. garinii 7 0.5%  T25 25

The structure of the OspA protein from B. burgdorferi s.s. strain B31 was determined by Li et al. (Proc Natl Acad Sci (1997) 94:3584-3589). It is composed of N-terminal (β-strands 1 to 4) and central β-sheets (β-strands 5 to 14n [N-terminal part]), barrel sheet 1 (β-strands 14c [C-terminal part] to 16), barrel sheet 2 (β-strands 17 to 21) and a C-terminal α-helix. The term “OspA C-terminal domain” or “C-terminal domain” or “wild-type fragment” with respect to OspA as used throughout the present specification shall mean the C-terminal portion of OspA, i.e., OspA lacking at least the N-terminal β-sheet (including β-strands 1 to 4). In OspA from B. burgdorferi s.s. strain B31, the N-terminal sheet consists of amino acids 17 to 70 (following post-translational cleavage of the 16 aa long lipidation signal peptide). The C-terminal OspA fragment of the current invention may also include a lipidation signal sequence at the N-terminus, e.g., the lipidation signal sequence of amino acids 1 to 16 of OspA (SEQ ID NO: 14) or OspB (SEQ ID NO: 15) from B. burgdorferi s.s. strain B31, a lipidation signal sequence from E. coli, referred to herein as the “lpp lipidation signal” (SEQ ID NO: 16), or any other signal sequence, e.g., as defined below.

Lipidation of a protein with an N-terminal lipidation signal sequence, such as those present on a nascent OspA polypeptide, occurs in the E. coli expression vector by the step-wise action of the enzymes diacylglyceryl transferase, signal peptidase II and transacylase, respectively. The first step is the transfer of a diacylglyceride to the cysteine sulphydryl group of the unmodified prolipoprotein, followed by the cleavage of the signal peptide by signal peptidase II and, finally, the acylation of the α-amino group of the N-terminal cysteine of the apolipoprotein. The result is the placement of one lipid and a glycerol group substituted with two further lipids on the N-terminal cysteine residue of the polypeptide. The lipidation signal sequence, which is cleaved off during lipidation, is not present in the final polypeptide sequence.

According to the current invention, the mutant OspA fragment may be a lipidated protein, also lipoprotein, wherein the lipid moieties, along with the glycerol group, is also referred to as “Lip”. According to the invention, Lip comprises one to three lipids such as C₁₄₋₂₀ alkyl and/or C₁₄₋₂₀ alkenyl attached to a glycerol and the N-terminal cysteine of the polypeptide of the invention, or preferably wherein Lip is a moiety of formula (I) below,

in which one of R₁, R₂ or R₃ is C₁₄-C₂₀ alkyl or alkenyl, and each of the others, independently is C₁₄-C₂₀ alkyl or C₁₄-C₂₀ alkenyl, and X is an amino acid sequence attached to the cysteine residue shown in Formula (I). More preferably, Lip plus the N-terminal cysteine of the polypeptide is N-palmitoyl-S-(2RS)-2,3-bis-(palmitoyloxy) propyl cysteine (referred to herein as “Pam₃Cys” (SEQ ID NO: 139)) and is connected via the carbonyl C of the cysteine to said amino acid sequence of the invention. In Formula (I) above R₁, R₂ and R₃ would be palmitoyl moieties and X is an amino acid sequence attached to the cysteine residue.

In accordance with the current invention, the C-terminal domain of an OspA from a strain other than B. burgdorferi s.s. B31 is defined by (i) lacking at least amino acids 17 to 70 and/or (ii) by lacking at least the N-terminal domain homologous to amino acids 17 to 70 of OspA from B. burgdorferi s.s. B31. Additionally, the OspA C-terminal domain according to the present invention may also lack further portions of the central sheet as defined by Li and co-workers (Li et al., supra), particularly further strands such as the amino acid portions from amino acid 17 to 82, 93, 105, 118 or 119, preferably 17 to 129, more preferably 1 to 125, 1 to 129 or 1 to 130 of any Borrelia, particularly B. burgdorferi s.s. B31, or homologous portions of an OspA protein from a Borrelia sp. other than B. burgdorferi s.s. B31.

In the context of the present invention, the OspA C-terminal domain is also referred to as “OspA fragment” or “fragment of OspA”.

The “mutant fragment” in the context of the polypeptide of the present invention and as used throughout the present specification shall mean the OspA C-terminal fragment, as defined above, which differs from the wild-type fragment by at least two introduced cysteines that can form a disulfide bond. Without being bound to that theory, it is assumed that the disulfide bond stabilizes the fragment in a conformation conducive to the induction of antibody binding. The fold of the wild-type C-terminal fragment of OspA shows reduced temperature stability in comparison to the full-length protein (Koide et al., Structure-based Design of a Second-generation Lyme Disease Vaccine Based on a C-terminal Fragment of Borrelia burgdorferi OspA, J. Mol. Biol. (2005) 350:290-299). For the present invention, the sequence of the C-terminal domain of the B. burgdorferi s.s. B31 OspA has been in silico analyzed to determine positions for introduced disulfide bridges that may enhance the stability of the fold of this C-terminal domain. The results of the analysis have been transferred to homologous OspA fragments of other Borrelia species with the assumption that the fold is conserved across species.

Typically, the disulfide bond may be introduced by introduction of one or more cysteine residues, wherein a disulfide bond (S—S bridge) is formed between the thiol groups of two cysteine residues. Only one cysteine residue need be introduced if a disulfide bond is formed with a cysteine residue present in the wild-type fragment. The one, or preferably two, cysteine(s) may be introduced by amino acid addition or, preferably, substitution.

The OspA mutant fragment may also comprise further mutations relative to the wild-type. As detailed above, the structure and surface domain of OspA are known in the art. Accordingly, the mutant fragment may comprise further mutations, particularly at sites not on the surface of the protein and/or not involved in the immune response and, therefore not impacting antigenic capacity. These can include one or more amino acid deletion(s), particularly small (e.g., up to 10 amino acids) deletions, one or more amino acid addition(s) (particularly C- or N-terminally), one or more amino acid substitution(s), particularly one or more conservative amino acid substitutions. Examples of conservative amino acid substitutions include, but are not limited to, those listed below:

Ala Ser Arg Lys Asn Gln; His Asp Glu Cys Ser Gln Asn Glu Asp His Asn; Gln Ile Leu, Val Leu Ile; Val Lys Arg; Gln; Asn Met Leu; Ile Phe Met; Leu; Tyr Ser Thr Thr Ser Trp Tyr Tyr Trp; Phe Val Ile; Leu

Preferred mutations include changes in selected portions of the fragment, for example, wherein the sequence with sequence similarity to human leukocyte function-associated antigen (hLFA-1), which exists in B. burgdorferi s.s., is modified, for example, replaced by a homologous sequence from an OspA protein from another Borrelia sp. The rationale for this modification is to reduce the risk for inducing immunological cross-reaction with human proteins. Also possible is the addition of a signal sequence for lipidation in the final, or an intermediate, fragment, or the addition of a marker protein (e.g., for identification or purification).

In some embodiments, the mutant OspA fragment has an amino acid sequence that has 60%, preferably at least 70%, more preferably at least 80%, more preferably 85%, more preferably 90%, even more preferably 95% sequence identity to the wild-type fragment.

Identity, as known in the art and as used herein, is the relationship between two or more polypeptide sequences, as determined by comparing the sequences. In the art, identity also means the degree of sequence relatedness between polypeptide or polynucleotide sequences, as the case may be, as determined by the match between strings of such sequences. Identity can be readily calculated. While a number of methods exist to measure identity between two polynucleotides or two polypeptide sequences, the term is well known to skilled artisans (e.g. Sequence Analysis in Molecular Biology, von Heinje, G., Academic Press, 1987). Preferred methods to determine identity are designed to give the largest match between the sequences tested. Methods to determine identity are codified in computer programs. Preferred computer program methods to determine identity between two sequences include, but are not limited to, the GCG program package (Devereux, J. et al., 1984), BLASTP, BLASTN, and FASTA (Altschul, S. et al., 1990).

In contrast to the mutant OspA fragment, the “wild-type fragment” in the context of the present invention relates to a fragment of a naturally-occurring OspA of Borrelia. The wild-type fragment is obtained by N-terminal deletions, but it does not comprise internal deletions (except from signal sequences as detailed herein) or mutations. In relation to the mutant OspA fragment, the wild-type fragment consists of an identical part of the OspA (identical length and same strain of OspA, etc.) and differs only in the mutation(s) detailed above, particularly in the introduction of at least one disulfide bond or the replacement of a sequence with human homology.

In one embodiment of the present invention, the mutant OspA fragment may differ from the respective wild-type fragment only by the introduction of at least one, preferably exactly one, disulfide bond.

A polypeptide is a single linear polymer of amino acids linked by peptide bonds. In accordance with the present invention, the polypeptide may also compromise one or more posttranslational modifications; i.e., an attached biochemical functional group, such as an attached acetate, phosphate, lipid or carbohydrate, preferably a lipid or lipids attached to the N-terminal cysteine along with a glycerol, more preferably 1 to 3 C₁₄-C₂₀ alkyl or alkenyl moieties, even more preferably 1 to 3 palmitoyl groups, most preferably three palmitoyl groups (Pam₃).

In accordance with the present invention, the polypeptide of the present invention comprises the above-described mutant OspA fragment. According to the present invention, it does not comprise (i) the N-terminal sheet as defined above and (ii) optionally further strands of the central sheet as defined above. However, the polypeptide may comprise one or more functional sequences such as a signal sequence, e.g., a lipidation signal sequence or a posttranslational modification, such as lipidation.

In a further embodiment of the present invention, the polypeptide of the present invention consists of (i) one or more mutant OspA fragments, optionally joined by linkers, e.g., as defined below and (ii) optionally one or more amino acids heterologous to OspA, particularly a signal sequence and (iii) optionally a posttranslational modification, such as lipidation.

The polypeptide of the present invention has protective capacity. As detailed above, the introduction of a disulfide bond into the mutant OspA fragment increases the protective capacity of the polypeptide relative to a polypeptide comprising the respective fragment without the disulfide bond(s). In some embodiments, the protective capacity is increased by at least 10%, more preferably by at least 20%, more preferably by at least 30%, more preferably by at least 40%, more preferably by at least 50%, more preferably by at least 60%, more preferably by at least 70%, more preferably by at least 80%, even more preferably by at least 90%.

The term protective capacity describes the ability to protect a subject against a Borrelia infection. With respect to the polypeptide of the invention, protective capacity relates to the ability of the polypeptide to induce an immune response that protects a subject against a Borrelia infection. Protective capacity can be tested by administering to a subject the polypeptide in a manner to induce an immune reaction against the polypeptide. Thereafter, the subject may be challenged with Borrelia. The subject's reaction to the infection is monitored. Particularly, the presence of Borrelia in the subject may be determined. For example, the polypeptide is protective if Borrelia cannot be detected in the subject. The presence of Borrelia can be determined by detecting Borrelia-specific nucleic acids (e.g., by PCR) or Borrelia-specific antibodies (e.g., by ELISA or Western blot) or by detecting Borrelia itself (e.g., culturing organs or tissues in growth medium and verifying the presence of Borrelia by microscopy). In particular, the protective capacity (“pc”), reported as a percentage, for a particular dose is defined as follows: pc (%)=[(number of total tested subjects−number of Borrelia-infected subjects)/number of total tested subjects]×100

Differences in protective capacity (Δpc) may be determined by, e.g. comparing the protective capacity (pc) of a mutant OspA fragment with a disulfide bond(s) (pc [with bond]) to the protective capacity of an OspA fragment without a disulfide bond(s) (pc [w/o bond]). In accordance with the present invention, the polypeptides to be compared differ only in the introduction of at least one disulfide bond. The change in protective capacity (Δpc) by the introduction of the disulfide bond(s) is determined as follows: Δpc=(pc[sample]−pc[control]) e.g. Δpc=(pc[with bond]−pc[w/o bond])

If Δpc is greater than zero (>0), assuming all other parameters (e.g., dose and assay) are the same, then the protective capacity of the sample (e.g. the mutant OspA fragment with a disulfide bond(s)) is better than the protective capacity of the control (e.g. the OspA fragment without a disulfide bond(s)). Conversely, if Δpc is less than zero (<0) and assuming all other parameters (e.g., dose and assay) are the same, then the protective capacity of the sample (e.g. the mutant OspA fragment with a disulfide bond(s)) is less than the protective capacity of the comparison (e.g., the OspA fragment without a disulfide bond(s)).

Preferably, the polypeptide of the present invention is assessed for its protective capacity by an in vivo animal assay wherein mice immunized with the polypeptide of the invention or with a control inoculate are challenged with Borrelia introduced into the immunized subjects with a hypodermic needle. More preferably, the polypeptide of the present invention is assessed for its protective capacity by an in vivo animal assay comprising the steps of a) applying at least one I. ricinus nymph infected with Borrelia, e.g., B. afzelii, strain IS1, to a mouse that is immunized with said first polypeptide of the first aspect; and b) applying at least one I. ricinus nymph infected with Borrelia, e.g., B. afzelii, strain IS1, to a second mouse that is immunized with said second polypeptide of the first aspect; and c) comparing the rates of infection in the two mice. Preferably, the assay or test is done with a group of mice per polypeptide to be tested. A suitable test is also described and illustrated in the Examples.

In a preferred embodiment of the present invention, the products of the invention such as, e.g. the polypeptides of the invention comprising the mutant OspA fragment with a disulfide bond(s) administered 3 times at a dose of 5.0 μg, preferably 1.0 μg, preferably 0.3 μg or lower have a protective capacity of 80% or more, preferably 90% or more, even more preferably 95% or more, most preferred 99% or more. It has been surprisingly observed that immunization with an OspA mutant fragment of one Borrelia serotype can provide cross-protection against other another serotype (Example 4, Table 4). Based on this finding, it might be anticipated that the dose of polypeptide of the present invention could be even further reduced.

In a preferred embodiment of the present invention, the C-terminal domain of an OspA protein of Borrelia consists of (i) the amino acids from position 126, 131 or 130 to position 273 of the OspA of B. afzelii, strain K78 or (ii) the homologous domain to amino acids of OspA from a Borrelia strain other than B. afzelii, strain K78. Accordingly, the polypeptide of the present invention comprises or consists of (i) one or more of these mutant fragments, optionally joined by linkers, e.g., as defined below and (ii) optionally one or more amino acids heterologous to OspA, particularly a signal sequence or site for a post-translational modification such as lipidation and (iii) optionally a posttranslational modification, such as lipidation.

In accordance with the present invention, a disulfide bond is introduced into an OspA fragment. This may preferably be achieved by introducing into the fragment at least 1 or 2 cysteine(s), particularly 2 cysteines, in order to allow for the formation of the at least one disulfide bond. Only one cysteine may be introduced, if another cysteine in the fragment is available for a disulfide bond. However, preferably two cysteines are introduced. The cysteine(s) is/are introduced by amino acid addition or substitution, preferably substitution. In case of addition, the cysteine is inserted into the amino acid sequence between two amino acids, whereas in case of substitution one amino acid is replaced with the cysteine.

In accordance with the present invention, the OspA may be from any Borrelia strain, particularly from those specified herein such as B. burgdorferi s.s., B. garinii, B. afzelii, B. andersonii, B. bissettii, B. valaisiana, B. lusitaniae, B. spielmanii, B. japonica, B. tanukii, B. turdi or B. sinica, B. bavariensis, preferably from B. burgdorferi s.s., B. afzelii, B. bavariensis or B. garinii. Preferably, the OspA is from B. afzelii, particularly strain K78, OspA serotype 2 (SEQ ID NO: 19); B. burgdorferi s.s., particularly strain B31, OspA serotype 1 (SEQ ID NO: 20); B. garinii, particularly strain PBr, OspA serotype 3 (SEQ ID NO: 21); B. bavariensis, particularly strain PBi, OspA serotype 4 (SEQ ID NO: 22); B. garinii, particularly strain PHei, OspA serotype 5 (SEQ ID NO: 23); B. garinii, particularly strain DK29, OspA serotype 6 (SEQ ID NO: 24) or B. garinii, particularly strain T25, OspA serotype 7 (SEQ ID NO: 25). The amino acid sequences of these OspA proteins (full-length) are given below.

TABLE A-3 Accession numbers of OspA sequences from selected strains of Borrelia species. Organism_Strain db|accession.version Organism_Strain db|accession.version Organism_Strain db|accession.version Bbu_156a (serotype 1) gb|ACL33776.1 Bbu_K48 emb|CAA44492.1 Bga_Mng4702 gb|ABF29559.1 Baf_K78 (serotype 2) emb|CAA49828.1 Bbu_N40 gb|ACS94765.1 Bga_N34 emb|CAB64763.1 Bga_PBr (serotype 3) emb|CAA56549.1 Bbu_P0A3N6.1 sp|P0A3N6.1 Bga_Nov1006 gb|ACD02016.1 Bga_PBi (serotype 4) emb|CAA56550.1 Bbu_PBo emb|CAA56468.1 Bga_Nov105 gb|ABF29551.1 Bbu_PHei (serotype 5) tr|Q06228 Bbu_PBre emb|CAA59742.1 Bga_Nov14506 gb|ACD02013.1 Bbu_DK29 (serotype 6) emb|CAA45010.1 Bbu_PHei emb|CAA56544.1 Bga_Nov14606 gb|ACD02017.1 Bga_T25 (serotype 7) emb|CAA56547.1 Bbu_PKa emb|CAA56467.1 Bga_Nov2005 gb|ABF29553.1 Baf_ACA-1 gb|ACJ73559.1 Bbu_PKo emb|CAA46550.1 Bga_Nov2006 gb|ACD02018.1 Baf_K78 (sequenced) Bbu_Poti_B1 emb|CAB64754.1 Bga_Nov3305 gb|ABF29554.1 Baf_Khab_625 gb|AAR96311.1 Bbu_Poti_B2 emb|CAB64755.1 Bga_Nov405 gb|ABF29552.1 Baf_Khab2-Sakh gb|AAP94134.1 Bbu_Poti_B3 emb|CAB64756.1 Bga_Nov7006 gb|ACD02014.1 Baf_Khab470 gb|AAO91923.1 Bbu_PTro emb|CAA56471.1 Bga_Nov9906 gb|ACD02015.1 Baf_Khab505 gb|AAO91925.1 Bbu_PWudI emb|CAA56469.1 Bga_PBi gb|AAT93773.1 Baf_LU192 (sequenced, partial) Bbu_PWudI/6 emb|CAA56470.1 Bga_PBr emb|CAA56549.1 Baf_Mng3602 gb|ABF29573.1 Bbu_PWudII emb|CAA56546.1 Bga_Q1HLH6 gb|ABF29564.1 Baf_Mng4302 gb|ABF29574.1 Bbu_Q04851.1 sp|Q04851.1 Bga_T25 emb|CAA56547.1 Baf_Mng6702 gb|ABF29578.1 Bbu_Q04968.1 sp|Q04968.1 Bga_TIsl emb|CAA59727.1 Baf_Mng702 gb|ABF29572.1 Bbu_Q09086.1 sp|Q09086.1 Bga_TN emb|CAA56545.1 Baf_Nov1105 gb|ABF29569.1 Bbu_Q09087.1 sp|Q09087.1 Bga_Tom1003 gb|ABF29564.1 Baf_Nov11506 gb|ACD02019.1 Bbu_Q44738 tr|Q44738 Bga_Tom1805 gb|ABF29567.1 Baf_Nov3005 gb|ABF29570.1 Bbu_Q44956 emb|CAA56937.1 Bga_Tom203 gb|ABF29562.1 Baf_P0A3N7.1 sp|P0A3N7.1 Bbu_Q44962 dbj|BAA06133.1 Bga_Tom2903 gb|ABF29565.1 Baf_PHo emb|CAA59724.1 Bbu_Q45039 emb|CAR95556.1 Bga_Tom3005 gb|ABF29568.1 Baf_PKo gb|ABH02138.1 Bbu_Q45040 tr|Q45040 Bga_Tom303 gb|ABF29563.1 Baf_PLe emb|CAA59970.1 Bbu_S-1-10 gb|AAB96354.1 Bga_Tom3101 gb|ABF29557.1 Baf_PLj7 emb|CAA59725.1 Bbu_T.R.O. emb|CAA46549.1 Bga_Tom3803 gb|ABF29566.1 Baf_PLud emb|CAA59726.1 Bbu_T255 emb|CAA59730.1 Bga_Tom5102 gb|ABF29560.1 Baf_Tom1103 gb|ABF29581.1 Bbu_UK emb|CAB64758.1 Bga_Tom5202 gb|ABF29561.1 Baf_Tom1303 gb|ABF29582.1 Bbu_VS116 emb|CAB64757.1 Bga_Tom7105 gb|ABF29556.1 Baf_Tom1503 gb|ABF29583.1 Bbu_VS461 emb|CAA82329.1 Bga_VS100 emb|CAB64765.1 Baf_Tom2303 gb|ABF29584.1 Bbu_WI91-23 ref|ZP_03091138.1 Bga_VS307 emb|CAB64764.1 Baf_Tom2403 gb|ABF29585.1 Bbu_ZQ1 emb|CAA01704.1 Bga_WABSou emb|CAA59728.1 Baf_Tom2504 gb|ABF29577.1 Bbu_ZS7 gb|ACK74228.1 Bja_Cow611 emb|CAB64759.1 Baf_Tom2803 gb|ABF29586.1 Bga_BgVir-1 gb|ABF29555.1 Bja_F63 emb|CAB64760.1 Baf_Tom3401 gb|ABF29571.1 Bga_Far04 ref|ZP_03328706.1 Bja_HO14 emb|CAB64762.1 Baf_Tom3703 gb|ABF29587.1 Bga_FujiP2 gb|AAA92301.1 Bja_IKA2 emb|CAB64761.1 Baf_Tom4703 gb|ABF29588.1 Bga_IP90 emb|CAJ75754.1 Blu_A8D057 gb|ABR22627.1 Baf_Tom5403 gb|ABF29575.1 Bga_Ip90 emb|CAJ75754.1 Blu_A8D060 gb|ABR22625.1 Baf_Tom603 gb|ABF29579.1 Bga_JEM1 gb|AAB81567.1 Blu_A8D075 gb|ABR22628.1 Baf_Tom6303 gb|ABF29576.1 Bga_JEM2 gb|AAB81569.1 Blu_A8D079 gb|ABR22629.1 Baf_Tom703 gb|ABF29580.1 Bga_JEM3 gb|AAB81571.1 Blu_ABR22624.1 gb|ABR22624.1 Baf_XJ23 gb|AAB95225.1 Bga_JEM4 dbj|BAA19222.1 Blu_ABR22S26.1 gb|ABR22626.1 Bbu_118a ref|ZP_02720644.1 Bga_JEM5 gb|AAB81573.1 Bsp_A14S gb|AAD16455.1 Bbu_156a gb|ACL33776.1 Bga_JEM6 gb|AAB81575.1 Btu_Ya501 dbj|BAA32513.1 Bbu_19857 emb|CAA48196.1 Bga_JEM7 gb|AAB81577.1 Bva_AR-2 gb|AAF00571.1 Bbu_2005348A prf|2005348A Bga_JEM8 gb|AAB81579.1 Bva_M19 gb|AAF00573.1 Bbu_2005348B prf|2005348B Bga_Khab3155 gb|AAR96310.1 Bva_M49 gb|AAF00574.1 Bbu_297 emb|CAA59729.1 Bga_Khab550 gb|AAR96306.1 Bva_M52 gb|AAF00575.1 Bbu_29805 ref|ZP_03092996.1 Bga_Khab616 gb|AAR96307.1 Bva_M53 gb|AAF00576.1 Bbu_64b ref|ZP_03097520.1 Bga_Khab648 gb|AAR96308.1 Bva_M7 gb|AAF00572.1 Bbu_72a ref|ZP_02724465.1 Bga_Khab722 gb|AAR96309.1 Bva_Q9RM88 emb|CAB56150.1 Bbu_80a ref|ZP_03088001.1 Bga_Khab23 gb|AAP94125.1 Bva_QLZSP1 gb|ACA13516.1 Bbu_94a ref|ZP_02725946.1 Bga_Khab24 gb|AAP94126.1 Bva_QSDS4 gb|ACA13517.1 Bbu_AAB23809.1 gb|AAB23809.1 Bga_Khab31 gb|AAP94127.1 Bva_QSYSP3 gb|ACA13518.1 Bbu_AAB23810.1 gb|AAB23810.1 Bga_Khab31a gb|AAP94128.1 Bva_QSYSP4 gb|ACA13519.1 Bbu_B29 gb|AAA18508.1 Bga_Khab-466 gb|AAP94129.1 Bva_QTMP2 gb|ACA13520.1 Bbu_B31 gb|AAC66260.1 Bga_Khab489 gb|AAP94130.1 Bva_QX-S13 gb|ACA13521.1 Bbu_Bol26 ref|ZP_02531917.1 Bga_Khab5-Sakh gb|AAO91932.1 Bva_UK gb|AAF00570.1 Bbu_C-1-11 gb|AAB96351.1 Bga_Khab506 gb|AAP94132.1 Bva_VS116 gb|AAF00569.1 Bbu_CA-11.2a_1 ref|ZP_03094587.1 Bga_Khab516 gb|AAP94133.1 Bsp_10MT dbj|BAA32516.1 Bbu_CA-11.2a_2 ref|ZP_03094587.1 Bga_Khab721 gb|AAP94131.1 Bsp_5MT dbj|BAA32515.1 Bbu_CA-11.2a_CA-112a ref|ZP_03094587.1 Bga_Khab2119 gb|AAO91928.1 Bsp_Am501 dbj|BAA32514.1 Bbu_CAA00316.1 emb|CAA00316.1 Bga_Khab2559 gb|AAO91929.1 Bsp_LV5 gb|AAB96353.1 Bbu_CAA42842.1 emb|CAA42842.1 Bga_Khab2560 gb|AAO91930.1 Bsp_PAnz emb|CAJ43585.1 Bbu_CAA44258.1 emb|CAA44258.1 Bga_Khab2594 gb|AAO91931.1 Bsp_PHaP_PHap emb|CAJ43582.1 Bbu_CAR95597.1 emb|CAR95597.1 Bga_Khab430 gb|AAO91919.1 Bsp_PJes emb|CAJ43586.1 Bbu_DK1 gb|AAA22955.1 Bga_Khab448 gb|AAO91920.1 Bsp_PMai emb|CAJ43584.1 Bbu_DK29 emb|CAA45010.1 Bga_Khab457 gb|AAO91921.1 Bsp_PMew emb|CAJ43583.1 Bbu_DK6_Danish_isolate emb|CAA58601.1 Bga_Khab468 gb|AAO91922.1 Bsp_PSigII emb|CAJ43581.1 Bbu_G2 gb|AAA88846.1 Bga_Khab492 gb|AAO91924.1 Bsp_SV1 ref|ZP_03095680.1 Bbu_G25 emb|CAA82328.1 Bga_Khab511 gb|AAO91926.1 Bbi_25015 gb|AAB21761.1 Bbu_H.E. emb|CAA46551.1 Bga_Khab560 gb|AAO91927.1 Bbi_DN127 emb|CAB64766.1 Bbu_HB19 gb|AAC18776.1 Bga_LV4 gb|AAB96352.1 Bbi_Q09087.1 gb|AAB21761.1 Abbreviations: Baf = Borrelia afzelii, Bbu = Borrelia burgdorferi s.s., Bga = Borrelia garinii, Bsp = Borrelia spielmanii, Bbi = Borrelia bissettii, Bva = Borrelia valaisiana, Btu = Borrelia turicatae, Bdu = Borrelia duttonii, Blu = Borrelia lusitaniae, Bja = Borrelia japonica, gb = GenBank, emb = EMBL, tr = UniProt/tremble, sp = UniProt/Swissprot, prf = Protein Research Foundation, dbj = DNA Databank of Japan (DDBJ), pdb = Protein Data Bank, db = database

In accordance with the present invention, the disulfide bond may be formed between cysteines that have been introduced at any position of the OspA fragment allowing or supporting appropriate folding of the fragment. The positions may be selected, as detailed above, based on the known structure of the OspA. In a preferred embodiment, the polypeptide of the current invention contains at least one disulfide bond between any of positions 182+/−3 and any of positions 269+/−3 (disulfide bond type 1); any of positions 182+/−3 and any of positions 272+/−3 (disulfide bond type 2); any of positions 244+/−3 and any of positions 259+/−3 (disulfide bond type 3); any of positions 141+/−3 and any of positions 241+/−3 (disulfide bond type 4); any of positions 165+/−3 and any of positions 265+/−3 (disulfide bond type 5); any of positions 185+/−3 and any of positions 272+/−3 (disulfide bond type 6); any of positions 199+/−3 and any of positions 223+/−3 (disulfide bond type 7); any of positions 243+/−3 and any of positions 262+/−3 (disulfide bond type 8); any of positions 184+/−3 and any of positions 204+/−3 (disulfide bond type 9); any of positions 201+/−3 and any of positions 214+/−3 (disulfide bond type 10); any of positions 246+/−3 and any of positions 259+/−3 (disulfide bond type 11); and/or any of positions 167+/−3 and any of positions 178+/−3 (disulfide bond type 12) of a B. afzelii, particularly B. afzelii K78 serotype 2 OspA, or the homologous amino acids of an OspA from a Borrelia sp. other than B. afzelii, such as B. burgdorferi s.s., particularly strain B31, serotype 1; B. garinii, particularly strain PBr, serotype 3; B. bavariensis, particularly strain PBi, serotype 4; B. garinii, particularly strain PHei, serotype 5; B. garinii, particularly strain DK29, serotype 6 or B. garinii, particularly strain T25, serotype 7.

More particularly, the polypeptide of the current invention contains the at least one disulfide bond between any of positions 182 and 269 (disulfide bond type 1); positions 182 and 272 (disulfide bond type 2); positions 244 and 259 (disulfide bond type 3); positions 141 and 241 (disulfide bond type 4); positions 165 and 265 (disulfide bond type 5); positions 185 and 272 (disulfide bond type 6); positions 199 and 223 (disulfide bond type 7); positions 243 and 262 (disulfide bond type 8); positions 184 and 204 (disulfide bond type 9); positions 201 and 214 (disulfide bond type 10); positions 246 and 259 (disulfide bond type 11); and/or positions 167 and 178 (disulfide bond type 12) of a B. afzelii, particularly B. afzelii K78 serotype 2 OspA, or the homologous amino acids of an OspA from a Borrelia other than B. afzelii, such as B. burgdorferi s.s., particularly strain B31, serotype 1; B. garinii, particularly strain PBr, serotype 3; B. bavariensis, particularly strain PBi, serotype 4; B. garinii, particularly strain PHei, serotype 5; B. garinii, particularly strain DK29, serotype 6 or B. garinii, particularly strain T25, serotype 7.

TABLE A-4 Disulfide bond types with nomenclature and the position of the cysteine substitutions in the serotype 2 OspA protein. Position of cysteines in B. afzelii Disulfide bond type Nomenclature K78 serotype 2 OspA wild-type sequence D0 No cysteine substitutions 1 D1 182 and 269 2 D2 182 and 272 3 D3 244 and 259 4 D4 141 and 241 5 D5 165 and 265 6 D6 185 and 272 7 D7 199 and 223 8 D8 243 and 262 9 D9 184 and 204 10 D10 201 and 214 11 D11 246 and 259 12 D12 167 and 178

Even more preferred are disulfide bond types 1 to 5, especially disulfide bond types 1 to 4.

It is noted that:

Position 182+/−3 is an abbreviation for position 179, 180, 181, 182, 183, 184 or 185, preferably 182.

Position 269+/−3 is an abbreviation for position 266, 267, 268, 269, 270, 271 or 272, preferably 269.

Position 272+/−3 is an abbreviation for position 269, 270, 271, 272, 273, 274 or 275, preferably 272.

Position 244+/−3 is an abbreviation for position 241243, 242, 243, 244, 245, 246 or 247, preferably 244.

Position 259+/−3 is an abbreviation for position 256, 257, 258, 259, 260, 261 or 262, preferably 259.

Position 141+/−3 is an abbreviation for position 138, 139, 140, 141, 142, 143 or 144, preferably 141.

Position 241+/−3 is an abbreviation for position 238, 239, 240, 241, 242, 243 or 244, preferably 241.

Position 165+/−3 is an abbreviation for position 162, 163, 164, 165, 166, 167 or 168, preferably 165.

Position 265+/−3 is an abbreviation for position 262, 263, 264, 265, 266, 267 or 268, preferably 265.

Position 185+/−3 is an abbreviation for position 182, 183, 184, 185, 186, 187 or 188, preferably 185.

Position 199+/−3 is an abbreviation for position 196, 197, 198, 199, 200, 201 or 202, preferably 199.

Position 223+/−3 is an abbreviation for position 220, 221, 222, 223, 224, 225 or 226, preferably 223.

Position 243+/−3 is an abbreviation for position 240, 241, 242, 243, 244, 245 or 246, preferably 143.

Position 262+/−3 is an abbreviation for position 259, 260, 261, 262, 263, 264 or 265, preferably 262.

Position 184+/−3 is an abbreviation for position 181, 182, 183, 184, 185, 186 or 187, preferably 184.

Position 204+/−3 is an abbreviation for position 201, 202, 203, 204, 205, 206 or 207, preferably 204.

Position 201+/−3 is an abbreviation for position 198, 199, 200, 201, 202, 203 or 204, preferably 201.

Position 214+/−3 is an abbreviation for position 211, 212, 213, 214, 215, 216 or 217, preferably 214.

Position 246+/−3 is an abbreviation for position 243, 244, 245, 246, 247, 248 or 249, preferably 246.

Position 167+/−3 is an abbreviation for position 164, 165, 166, 167, 168, 169 or 170, preferably 167.

Position 178+/−2+/−3 is an abbreviation for position 175, 176, 177, 178, 179, 180 or 181, preferably 178.

In a preferred embodiment, the mutant fragment is derived from the amino acids from position 126, 130 or 131 to position 273 of the wild-type sequence of the OspA of B. afzelii strain K78, serotype 2 (SEQ ID NO: 19) and differs only by the introduction of at least one disulfide bond, particularly wherein the at least one disulfide bond is between positions 182 and 269 (disulfide bond type 1); positions 182 and 272 (disulfide bond type 2); positions 244 and 259 (disulfide bond type 3); positions 141 and 241 (disulfide bond type 4); positions 165 and 265 (disulfide bond type 5); positions 185 and 272 (disulfide bond type 6); positions 199 and 223 (disulfide bond type 7); positions 243 and 262 (disulfide bond type 8); positions 184 and 204 (disulfide bond type 9); positions 201 and 214 (disulfide bond type 10); positions 246 and 259 (disulfide bond type 11); and/or positions 167 and 178 (disulfide bond type 12), or the homologous fragments and positions of an OspA from a Borrelia sp. other than B. afzelii, such as B. burgdorferi s.s., particularly strain B31, serotype 1; B. garinii, particularly strain PBr, serotype 3; B. bavariensis, particularly strain PBi, serotype 4; B. garinii, particularly strain PHei, serotype 5; B. garinii, particularly strain DK29, serotype 6 or B. garinii, particularly strain T25, serotype 7.

In a still more preferred embodiment, the mutant fragment has an amino acid sequence selected from the group consisting of SEQ ID NO: 167, SEQ ID NO: 168, SEQ ID NO: 169, SEQ ID NO: 170, SEQ ID NO: 171, SEQ ID NO: 172, SEQ ID NO: 173, SEQ ID NO: 174, SEQ ID NO: 175, SEQ ID NO: 176, SEQ ID NO: 177, SEQ ID NO: 178 and an amino acid sequence that has 80%, more preferably 85%, more preferably 90%, even more preferably 95% sequence identity to at least one of sequences with SEQ ID NOs: 2 to 13, wherein the cysteines are not replaced. Further details on mutations and sequence identity are given above.

As detailed above, the polypeptide of the present invention may comprise signal sequences. It has been shown that lipidation confers adjuvant properties on OspA. Accordingly, lipidated forms of the polypeptide of the invention or polypeptides comprising a lipidation signal are preferred. In a preferred embodiment, the polypeptide of the current invention comprises a lipidation signal, preferably a lipidation signal of a Borrelia outer surface protein, OspA or OspB (SEQ ID NOs: 14 and 15, respectively) or more preferably an E. coli lpp lipidation signal sequence (SEQ ID NO: 16). The OspA fragment of the invention comprising a lipidation signal is lipidated during processing and the lipidation signal peptide is cleaved off. Therefore the signal peptide is no longer present in the mature lipidated protein.

Lipidated proteins according to the current invention are labeled with “Lip” at the N-terminus to indicate the addition of 3 fatty acid groups and a glycerol to the polypeptide (see FIG. 3). Suitable lipidation signals as described above include MKKYLLGIGLILALIA (SEQ ID NO: 14), MRLLIGFALALALIG (SEQ ID NO: 15) and MKATKLVLGAVILGSTLLAG (SEQ ID NO: 16). Because lipid moieties and a glycerol are attached to the N-terminal cysteine residue which is present in the full-length wild-type OspA protein, OspA C-terminal fragments for lipidation may additionally comprise a peptide comprising a cysteine residue followed by additional amino acids, herein referred to as “Lipidation Peptide” or “LP” (see FIGS. 1 and 2). For example, sequences such as CSS (SEQ ID NO: 210) or CKQN (SEQ ID NO: 211) immediately C-terminal to the lipidation signal sequence provide an N-terminal cysteine residue for lipidation upon cleavage of the lipidation signal peptide. The lipidated cysteine-containing peptides are present in the final lipidated polypeptide of the invention.

It has been found that the OspA protein of B. burgdorferi s.s. comprises a sequence with the capacity to bind to a T-cell receptor that also has the capacity to bind to human leukocyte function-associated antigen (hLFA-1) (herein referred to also as “hLFA-1-like sequence”). The similarity of this OspA region to hLFA-1 may result in an immune response with cross-reactivity upon administration of B. burgdorferi s.s. OspA to a human subject and may induce autoimmune diseases, particularly autoimmune arthritis, in susceptible individuals. Accordingly, in a preferred embodiment, the polypeptide of the current invention does not comprise a sequence with binding capacity to the T-cell receptor that has a binding capacity to the human leukocyte function-associated antigen (hLFA-1), and particularly does not comprise the amino acid sequence GYVLEGTLTAE (SEQ ID NO: 17). To this end, the hLFA-1-like sequence, particularly the amino acid sequence GYVLEGTLTAE (SEQ ID NO: 17), may be replaced with a homologous sequence from an OspA protein of another Borrelia sp., particularly with NFTLEGKVAND (SEQ ID NO: 18).

In a preferred embodiment, the polypeptide of the current invention comprising at least one disulfide bond essentially establishes the same protective capacity with said polypeptide against a Borrelia infection relative to at least one of the wild-type full-length OspA proteins derived from at least one Borrelia strain, particularly B. afzelii K78, OspA serotype 2 (SEQ ID NO: 19); B. burgdorferi s.s., particularly strain B31, serotype 1 (SEQ ID NO: 20); B. garinii, particularly strain PBr, serotype 3 (SEQ ID NO: 21); B. bavariensis, particularly strain PBi, serotype 4 (SEQ ID NO: 22); B. garinii, particularly strain PHei, serotype 5 (SEQ ID NO: 23); B. garinii, particularly strain DK29, serotype 6 (SEQ ID NO: 24) or B. garinii, particularly strain T25, serotype 7 (SEQ ID NO: 25).

In order to provide cross-protection against different Borrelia species or OspA serotypes, the development of a multivalent vaccine is desirable. Accordingly, in another preferred embodiment, the polypeptide of the first aspect comprises at least two mutant fragments from two different Borrelia serotypes as defined above. In a preferred embodiment, the polypeptide of the first aspect comprises at least two mutant OspA fragments which are selected from the group consisting of

-   -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 2;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 3;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 4;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 5;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 6;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 7;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 8;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 9;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 1 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 3;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 4;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 5;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 6;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 7;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 8;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 9;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 2 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 4;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 5;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 6;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 7;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 8;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 9;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 3 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 4 and fragment with disulfide         bond type 5;     -   fragment with disulfide bond type 4 and fragment with disulfide         bond type 6;     -   fragment with disulfide bond type 4 and fragment with disulfide         bond type 7;     -   fragment with disulfide bond type 4 and fragment with disulfide         bond type 8;     -   fragment with disulfide bond type 4 and fragment with disulfide         bond type 9;     -   fragment with disulfide bond type 4 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 4 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 4 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 5 and fragment with disulfide         bond type 6;     -   fragment with disulfide bond type 5 and fragment with disulfide         bond type 7;     -   fragment with disulfide bond type 5 and fragment with disulfide         bond type 8;     -   fragment with disulfide bond type 5 and fragment with disulfide         bond type 9;     -   fragment with disulfide bond type 5 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 5 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 5 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 6 and fragment with disulfide         bond type 7;     -   fragment with disulfide bond type 6 and fragment with disulfide         bond type 8;     -   fragment with disulfide bond type 6 and fragment with disulfide         bond type 9;     -   fragment with disulfide bond type 6 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 6 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 6 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 7 and fragment with disulfide         bond type 8;     -   fragment with disulfide bond type 7 and fragment with disulfide         bond type 9;     -   fragment with disulfide bond type 7 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 7 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 7 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 8 and fragment with disulfide         bond type 9;     -   fragment with disulfide bond type 8 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 8 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 8 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 9 and fragment with disulfide         bond type 10;     -   fragment with disulfide bond type 9 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 9 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 10 and fragment with disulfide         bond type 11;     -   fragment with disulfide bond type 10 and fragment with disulfide         bond type 12;     -   fragment with disulfide bond type 11 and fragment with disulfide         bond type 12;     -   and

particularly wherein

-   -   the fragment with disulfide bond type 1 has the amino acid         sequence of SEQ ID NO: 2 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 2, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 2 has the amino acid         sequence of SEQ ID NO: 3 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 3, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 3 has the amino acid         sequence of SEQ ID NO: 4 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 4, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 4 has the amino acid         sequence of SEQ ID NO: 5 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 5, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 5 has the amino acid         sequence of SEQ ID NO: 6 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 6, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 6 has the amino acid         sequence of SEQ ID NO: 7 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 7, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 7 has the amino acid         sequence of SEQ ID NO: 8 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 8, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 8 has the amino acid         sequence of SEQ ID NO: 9 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 9, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 9 has the amino acid         sequence of SEQ ID NO: 10 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 10, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 10 has the amino acid         sequence of SEQ ID NO: 11 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 11, wherein the         cysteines are not replaced;     -   the fragment with disulfide bond type 11 has the amino acid         sequence of SEQ ID NO: 12 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 12, wherein the         cysteines are not replaced; and/or     -   the fragment with disulfide bond type 12 has the amino acid         sequence of SEQ ID NO: 13 or an amino acid sequence that has at         least 80%, more preferably 85%, more preferably 90%, even more         preferably 95% sequence identity to SEQ ID NO: 13, wherein the         cysteines are not replaced.

Please note that further details on mutations and sequence identity are given above.

TABLE A-5 Nomenclature and SEQ ID NOs. of mutant OspA fragment heterodimers, non-lipidated and lipidated, described in the current invention. SEQ ID NO: Mutant OspA fragment heterodimer* S1D4-S2D4 43 S1D1-S2D1 47 S3D4-S4D4 51 S3D1-S4D1 55 S5D4-S6D4 59 S5D1-S6D1 63 S2D4-S1D4 67 S2D1-S1D1 71 S4D4-S3D4 75 S4D1-S3D1 79 S6D4-S5D4 83 S6D1-S5D1 87 S1D4-S2D1 91 S1D1-S2D4 95 S3D4-S4D1 99 S3D1-S4D4 103 S5D4-S6D1 107 S5D1-S6D4 111 S2D4-S1D1 115 S2D1-S1D4 119 S4D4-S3D1 123 S4D1-S3D4 127 S6D4-S5D1 131 S6D1-S5D4 135 Lipidated mutant OspA fragment heterodimer* Lip-S1D4-S2D4 185 Lip-S1D1-S2D1 186 Lip-S3D4-S4D4 187 Lip-S3D1-S4D1 188 Lip-S5D4-S6D4 189 Lip-S5D1-S6D1 190 Lip-S2D4-S1D4 191 Lip-S2D1-S1D1 192 Lip-S4D4-S3D4 193 Lip-S4D1-S3D1 194 Lip-S6D4-S5D4 195 Lip-S6D1-S5D1 196 Lip-S1D4-S2D1 197 Lip-S1D1-S2D4 198 Lip-S3D4-S4D1 199 Lip-S3D1-S4D4 200 Lip-S5D4-S6D1 201 Lip-S5D1-S6D4 202 Lip-S2D4-S1D1 203 Lip-S2D1-S1D4 204 Lip-S4D4-S3D1 205 Lip-S4D1-S3D4 206 Lip-S6D4-S5D1 207 Lip-S6D1-S5D4 208 *S = Serotype (1-6) (see Table A-2); D = Disulfide Bond Type (see Table A-4); Lip = lipidation: the N-terminal addition of glycerol and fatty acid residues.

In another preferred embodiment, the polypeptide according to the first aspect comprises at least two or three mutant fragments which are connected via one or more linkers. A linker is a rather short amino acid sequence employed to connect two fragments. It should be designed in order to avoid any negative impact on the fragments, their interaction in subjects to be treated or vaccinated or upon their protective capacity. Preferred are short linkers of at most 21 amino acids, particularly at most 15 amino acids, especially at most 12 or 8 amino acids. More preferably, the one or more linkers is/are composed of small amino acids in order to reduce or minimize interactions with the fragments, such as glycine, serine and alanine. Examples or preferred linkers include linkers comprising or consisting of polyG, such as (G)₃ (SEQ ID NO: 36), (G)₁₂ (SEQ ID NO: 37), GAGA (SEQ ID NO: 38), (GAGA)₂ (SEQ ID NO: 39), (GAGA)₃ (SEQ ID NO: 40), (GGGS)₂ (SEQ ID NO: 41), or (GGGS)₃ (SEQ ID NO: 42). A more preferred linker is the “LN1 peptide linker”, a fusion of two separate loop regions of the N-terminal half of OspA from B. burgdorferi s.s., strain B31 (aa 65-74 and aa 42-53, with an amino acid exchange at position 53 of D53S) which has the following sequence: GTSDKNNGSGSKEKNKDGKYS (SEQ ID NO: 184).

In another preferred embodiment, the polypeptide according to the first aspect comprises a polypeptide with a total size of at most 500 amino acids, comprising two or three different mutant fragments as defined in preferred embodiments of the first aspect; or a polypeptide which consists of essentially two or three different mutant fragments, one or two linkers and, optionally, an N-terminal cysteine; and/or a polypeptide which consists of essentially two or three different mutant fragments, an N-terminal extension of the fragment consisting of at most 24, 23, 22, 21, 20, 19, 18, 17, 16, 15, 14, 13, 12 or 11 amino acids, preferably at most 10, 9, 8, 7 or 6 amino acids, still more preferably at most 5, 4, 3, 2 or 1 amino acid(s), wherein the N-terminal extension is located directly N-terminally from the fragment in the respective Borrelia OspA and, optionally, an N-terminal cysteine. The N-terminal cysteine may optionally be followed by a short peptide linker from 1-10 amino acids long, and preferably takes the form of an N-terminal CSS peptide (SEQ ID NO: 210) or CKQN peptide (SEQ ID NO: 211).

In a second aspect, the present invention relates to a nucleic acid encoding for the polypeptide according to the first aspect.

Nucleic acid molecule as used herein generally refers to any ribonucleic acid molecule or deoxyribonucleic acid molecule, which may be unmodified RNA or DNA or modified RNA or DNA. Thus, for instance, nucleic acid molecule as used herein refers to at least single- and double-stranded DNA, hybrid molecules comprising DNA and RNA that may be single-stranded or, more typically, double-stranded, or a mixture of single- and double-stranded regions. As used herein, the term nucleic acid molecule includes DNA or RNA molecules as described above that contain one or more modified bases. Thus, DNA or RNA molecules with backbones modified for stability or for other reasons are “nucleic acid molecule” as that term is intended herein. Moreover, DNA or RNA species comprising unusual bases, such as inosine, or modified bases, such as tritylated bases, to name just two examples, are also nucleic acid molecules as defined herein. It will be appreciated that a great variety of modifications have been made to DNA and RNA molecules that serve many useful purposes known to those of skill in the art. The term nucleic acid molecule as used herein embraces such chemically, enzymatically or metabolically modified forms of nucleic acid molecules, as well as the chemical forms of DNA and RNA characteristic of viruses and cells, including simple and complex cells, inter alia. The term nucleic acid molecule also encompasses short nucleic acid molecules often referred to as oligonucleotide(s). The terms “polynucleotide” and “nucleic acid” or “nucleic acid molecule” are used interchangeably herein.

The nucleic acids according to the present invention may be chemically synthesized. Alternatively, the nucleic acids can be isolated from Borrelia and modified by methods known to one skilled in the art. The same applies to the polypeptides according to the present invention.

Furthermore, the nucleic acid of the present invention can be functionally linked, using standard techniques such as cloning, to any desired sequence(s), whether a Borrelia regulatory sequence or a heterologous regulatory sequence, heterologous leader sequence, heterologous marker sequence or a heterologous coding sequence to create a fusion gene.

Nucleic acid molecules of the present invention may be in the form of RNA, such as mRNA or cRNA, or in the form of DNA, including, for instance, cDNA and genomic DNA obtained by cloning or produced by chemical synthesis techniques or by a combination thereof. The DNA may be triple-stranded, double-stranded or single-stranded. Single-stranded DNA may be the coding strand, also known as the sense strand, or it may be the non-coding strand, also referred to as the anti-sense strand.

The nucleic acid of the present invention may be comprised in a vector or in a cell. The vector may comprise the above-mentioned nucleic acid in such a manner that the vector is replicable and can express the protein encoded by the nucleotide sequence in a host cell.

A great variety of expression vectors can be used to express the polypeptides according to the present invention. Generally, any vector suitable to maintain, propagate or express nucleic acids to express a polypeptide in a host may be used for expression in this regard. In accordance with this aspect of the invention the vector may be, for example, a plasmid vector, a single- or double-stranded phage vector or a single- or double-stranded RNA or DNA viral vector. Starting plasmids disclosed herein are either commercially available, publicly available, or can be constructed from available plasmids by routine application of well-known, published procedures. Preferred among vectors, in certain respects, are those for expression of nucleic acid molecules and the polypeptides according to the present invention. Nucleic acid constructs in host cells can be used in a conventional manner to produce the gene product encoded by the recombinant sequence. Alternatively, the polypeptides according to the present invention can be synthetically produced by conventional peptide synthesizers.

In addition, the present invention relates to a host cell comprising this vector. Representative examples of appropriate host cells include bacteria, such as streptococci, staphylococci, E. coli, Streptomyces and Bacillus subtilis; fungi, such as yeast and Aspergillus; insect cells such as Drosophila S2 and Spodoptera Sf9 cells; mammalian cells such as CHO, COS, HeLa, C127, 3T3, BHK, 293 or Bowes melanoma cells; and plant cells. Cell-free translation systems can also be employed to produce such proteins using RNA derived from the DNA construct of the present invention.

In order to express the desired amino acid sequence practically by introducing the vector according to the present invention into a host cell, the vector may contain, in addition to the nucleic acid sequence according to the present invention, other sequences for controlling the expression (e.g., promoter sequences, terminator sequences and enhancer sequences) and gene markers for selecting microorganisms, insect cells, animal culture cells, or the like (e.g., neomycin resistance genes and kanamycin resistance genes). Furthermore, the vector may contain the nucleic acid sequence according to the present invention in a repeated form (e.g., in tandem). The vector may be constructed based on procedures and manners which are conventionally used in the field of genetic engineering.

The host cells may be cultured in an appropriate medium, and the protein according to the present invention may be obtained from the culture product. The protein according to the present invention may be recovered from the culture medium and purified in the conventional manner.

In a third aspect the present invention relates to a pharmaceutical composition comprising the polypeptide according to the first aspect and/or the nucleic acid according to the second aspect and, optionally, a pharmaceutically acceptable carrier or excipient. Preferably, the pharmaceutical composition is used as a medicament, particularly as a vaccine or for preventing or treating an infection caused by Borrelia species, more preferably pathogenic Borrelia species as disclosed herein more preferably comprising B. burgdorferi s.s., B. afzelii, B. bavariensis and B. garinii, and/or other pathogens against which the antigens have been included in the vaccine.

The pharmaceutical composition may contain any pharmaceutically acceptable carrier or excipient, such as buffer substances, stabilisers or further active ingredients, especially ingredients known in connection with pharmaceutical compositions and/or vaccine production.

The invention also includes immunogenic compositions. In some aspects, an immunogenic composition of the invention comprises any of the compositions discussed herein and a pharmaceutically acceptable carrier. In various aspects, the immunogenic composition has the property of inducing production of an antibody that specifically binds an outer surface protein A (OspA) protein. In certain aspects, the immunogenic composition has the property of inducing production of an antibody that specifically binds Borrelia. In particular aspects, the immunogenic composition has the property of inducing production of an antibody that neutralizes Borrelia. In some aspects, the antibody is produced by an animal. In further aspects, the animal is a mammal. In even further aspects, the mammal is human.

The invention further includes vaccine compositions. In some aspects, a vaccine composition of the invention comprises any immunogenic composition discussed herein and a pharmaceutically acceptable carrier. In various aspects, the invention includes a combination vaccine. In certain aspects, a combination vaccine of the invention comprises any vaccine composition discussed herein in combination with at least a second vaccine composition. In some aspects, the second vaccine composition protects against a tick-borne disease. In various aspects, the tick-borne disease is Rocky Mountain Spotted Fever, Babesiosis, Relapsing Fever, Colorado tick fever, Human monocytic ehrlichiosis (HME), Human granulocytic ehrlichiosis (HGE), Southern Tick-Associated Rash Illness (STARI), Tularemia, Tick paralysis, Powassan encephalitis, Q fever, Crimean-Congo hemorrhagic fever, Cytauxzoonosis, boutonneuse fever, or tick-borne encephalitis. In other aspects, the second vaccine composition is a vaccine selected from the group consisting of a tick-borne encephalitis vaccine, a Japanese encephalitis vaccine, and a Rocky Mountain Spotted Fever vaccine. In various aspects, the second vaccine composition has a seasonal immunization schedule compatible with immunization against Borrelia infection or Lyme disease.

The invention also includes methods for inducing an immunological response in a subject. In various aspects, such methods comprise the step of administering any of the immunogenic compositions or vaccine compositions discussed herein to the subject in an amount effective to induce an immunological response. In certain aspects, the immunological response comprises production of an anti-OspA antibody.

The invention includes methods for preventing or treating a Borrelia infection or Lyme disease in a subject. In various aspects, such methods comprise the step of administering any of the vaccine compositions discussed herein or any of the combination vaccines discussed herein to the subject in an amount effective to prevent or treat the Borrelia infection or Lyme disease.

The invention includes uses of compositions of the invention for the preparation of medicaments. Other related aspects are also provided in the instant invention.

A preferable carrier or excipient for the polypeptides according to the present invention in their diverse embodiments, or a nucleic acid molecule according to the present invention is an immunostimulatory compound such as an adjuvant for further stimulating the immune response to the polypeptide according to the present invention or a coding nucleic acid molecule thereof.

Adjuvants which may be used in compositions of the invention include, but are not limited to:

A. Mineral-Containing Compositions

Mineral containing compositions suitable for use as adjuvants in the invention include mineral salts, such as aluminium salts and calcium salts. The invention includes mineral salts such as hydroxides (e.g., oxyhydroxides), phosphates (e.g., hydroxyphosphates, orthophosphates), sulphates, etc., or mixtures of different mineral compounds, with the compounds taking any suitable form (e.g., gel, crystalline, amorphous, etc.), and with adsorption being preferred. The mineral containing compositions may also be formulated as a particle of metal salt.

A useful aluminium phosphate adjuvant is amorphous aluminium hydroxyphosphate with PO₄/Al molar ratio between 0.84 and 0.92. Another useful aluminium-based adjuvant is AS04, a combination of aluminium hydroxide+monophosphoryl lipid A (MPL).

B. Oil Emulsions

Oil emulsion compositions suitable for use as adjuvants in the invention include squalene-in-water emulsions, such as MF59 (5% Squalene, 0.5% Tween 80, and 0.5% Span 85, formulated into submicron particles using a microfluidizer), AS03 (squalene, DL-α-tocopherol and Tween 80) and AF03 (squalene, Montane® 80 and Eumulgon® B1 PH). Complete Freund's adjuvant (CFA) and incomplete Freund's adjuvant (IFA) may also be used.

Useful oil-in-water emulsions typically include at least one oil and at least one surfactant, with the oil(s) and surfactant(s) being biodegradable (metabolizable) and biocompatible. The oil droplets in the emulsion are generally less than 1 μm in diameter, with these small sizes being achieved with a microfluidizer to provide stable emulsions. Droplets with a size less than 220 nm are preferred as they can be subjected to filter sterilization.

The emulsion can comprise oils such as those from an animal (such as fish) or vegetable source. Sources for vegetable oils include nuts, seeds and grains. Peanut oil, soybean oil, coconut oil, and olive oil, the most commonly available, exemplify the nut oils. Jojoba oil can be used e.g., obtained from the jojoba bean. Seed oils include safflower oil, cottonseed oil, sunflower seed oil, sesame seed oil and the like. In the grain group, corn oil is the most readily available, but the oil of other cereal grains such as wheat, oats, rye, rice, teff, triticale and the like may also be used. 6-10 carbon fatty acid esters of glycerol and 1,2-propanediol, while not occurring naturally in seed oils, may be prepared by hydrolysis, separation and esterification of the appropriate materials starting from the nut and seed oils. Fats and oils from mammalian milk are metabolizable and may therefore be used in the practice of this invention. The procedures for separation, purification, saponification and other means necessary for obtaining pure oils from animal sources are well known in the art. Most fish contain metabolizable oils which may be readily recovered. For example, cod liver oil, shark liver oils, and whale oil such as spermaceti exemplify several of the fish oils which may be used herein. A number of branched chain oils are synthesized biochemically in 5-carbon isoprene units and are generally referred to as terpenoids. Shark liver oil contains a branched, unsaturated terpenoid known as squalene, 2,6,10,15,19,23-hexamethyl-2,6,10,14,18,22-tetracosahexaene, which is particularly preferred herein. Squalane, the saturated analog to squalene, is also a preferred oil. Fish oils, including squalene and squalane, are readily available from commercial sources or may be obtained by methods known in the art. Other preferred oils are the tocopherols (see below). Mixtures of oils can be used.

Surfactants can be classified by their ‘HLB’ (hydrophile/lipophile balance). Preferred surfactants of the invention have a HLB of at least 10, preferably at least 15, and more preferably at least 16. The invention can be used with surfactants including, but not limited to: the polyoxyethylene sorbitan esters surfactants (commonly referred to as the Tweens), especially polysorbate 20 and polysorbate 80; copolymers of ethylene oxide (EO), propylene oxide (PO), and/or butylene oxide (BO), sold under the DOWF AX™ tradename, such as linear EO/PO block copolymers; octoxynols, which can vary in the number of repeating ethoxy (oxy-1,2-ethanediyl) groups, with octoxynol-9 (Triton X-100, or t-octylphenoxypolyethoxyethanol) being of particular interest; (octylphenoxy) polyethoxyethanol (IGEPAL CA-630/NP-40); phospholipids such as phosphatidylcholine (lecithin); nonylphenol ethoxylates, such as the Tergitol™ NP series; polyoxyethylene fatty ethers derived from lauryl, cetyl, stearyl and oleyl alcohols (known as Brij surfactants), such as triethyleneglycol monolauryl ether (Brij 30); and sorbitan esters (commonly known as the SPANs), such as sorbitan trioleate (Span 85) and sorbitan monolaurate. Non-ionic surfactants are preferred. Preferred surfactants for including in the emulsion are Tween 80 (polyoxyethylene sorbitan monooleate), Span 85 (sorbitan trioleate), lecithin and Triton X-100.

Mixtures of surfactants can be used e.g., Tween 80/Span 85 mixtures. A combination of a polyoxyethylene sorbitan ester such as polyoxyethylene sorbitan monooleate (Tween 80) and an octoxynol such as t-octylphenoxypolyethoxyethanol (Triton X-100) is also suitable. Another useful combination comprises laureth 9 plus a polyoxyethylene sorbitan ester and/or an octoxynol.

Preferred amounts of surfactants (% by weight) are: polyoxyethylene sorbitan esters (such as Tween 80) 0.01 to 1%, in particular about 0.1%; octyl- or nonylphenoxy polyoxyethanols (such as Triton X-100, or other detergents in the Triton series) 0.001 to 0.1%, in particular 0.005 to 0.02%; polyoxyethylene ethers (such as laureth 9) 0.1 to 20%, preferably 0.1 to 10% and in particular 0.1 to 1% or about 0.5%.

Preferably, substantially all (e.g. at least 90% by number) of the oil droplets have a diameter of less than 1 μm, e.g. <750 nm, <500 nm, <400 nm, <300 nm, <250 nm, <220 nm, <200 nm, or smaller. One specific useful submicron emulsion consists of squalene, Tween 80, and Span 85. The composition of the emulsion by volume can be about 5% squalene, about 0.5% polysorbate 80 and about 0.5% Span 85. In weight terms, these ratios become 4.3% squalene, 0.5% polysorbate 80 and 0.48% Span 85. The MF59 emulsion advantageously includes citrate ions e.g. 10 mM sodium citrate buffer.

C. Saponin Formulations

Saponin formulations may also be used as adjuvants in the invention. Saponins are a heterogeneous group of sterol glycosides and triterpenoid glycosides that are found in the bark, leaves, stems, roots and even flowers of a wide range of plant species. Saponin from the bark of the Quillaia saponaria Molina tree has been widely studied as adjuvant. Saponin can also be commercially obtained from Smilax ornata (sarsaprilla), Gypsophilla paniculata (brideal veil), and Saponaria officianalis (soap root). Saponin adjuvant formulations include purified formulations, such as QS21, as well as lipid formulations, such as ISCOMs. QS21 is marketed as Stimulon™.

Saponin compositions have been purified using HPLC and RP-HPLC. Specific purified fractions using these techniques have been identified, including QS7, QS 17, QS 18, QS21, QH-A, QH-B and QH-C. Preferably, the saponin is QS21. Saponin formulations may also comprise a sterol, such as cholesterol.

Combinations of saponins and cholesterols can be used to form unique particles called immunostimulating complexes (ISCOMs). ISCOMs typically also include a phospholipid such as phosphatidylethanolamine or phosphatidylcholine. Any known saponin can be used in ISCOMs. Preferably, the ISCOM includes one or more of QS7, QS 17, QS 18, QS21, QH-A, QH-B and QH-C. Optionally, the ISCOMS may be devoid of additional detergent.

D. Virosomes and Virus-Like Particles

Virosomes and virus-like particles (VLPs) can also be used as adjuvants in the invention. These structures generally contain one or more proteins from a virus optionally combined or formulated with a phospholipid. They are generally non-pathogenic, non-replicating and generally do not contain any of the native viral genome. The viral proteins may be recombinantly produced or isolated from whole viruses. These viral proteins suitable for use in virosomes or VLPs include proteins derived from influenza virus (such as HA or NA), Hepatitis B virus (such as core or capsid proteins), Hepatitis E virus, measles virus, Sindbis virus, Rotavirus, Foot-and-Mouth Disease virus, Retroviruses, Norwalk virus, Human Papilloma virus, HIV, RNA-phages, Qβ-phage (such as coat proteins), GA-phage, fr-phage, AP205 phage, and Ty (such as retrotransposon Ty protein pi).

E. Bacterial or Microbial Derivatives

Adjuvants suitable for use in the invention include bacterial or microbial derivatives such as non-toxic derivatives of enterobacterial lipopolysaccharide (LPS), Lipid A derivatives, immunostimulatory oligonucleotides and ADP-ribosylating toxins and detoxified derivatives thereof.

Non-toxic derivatives of LPS include monophosphoryl lipid A (MPL) and 3-O-deacylated MPL (3dMPL). 3dMPL is a mixture of 3 de-O-acylated monophosphoryl lipid A with 4, 5 or 6 acylated chains. Such “small particles” of 3dMPL are small enough to be sterile filtered through a 0.22 μm membrane. Other non-toxic LPS derivatives include monophosphoryl lipid A mimics, such as aminoalkyl glucosaminide phosphate derivatives e.g. RC-529 and the synthetic phospholipid dimer, E6020.

Lipid A derivatives include derivatives of lipid A from Escherichia coli such as OM-174. Immunostimulatory oligonucleotides suitable for use as adjuvants in the invention include nucleotide sequences containing a CpG motif (a dinucleotide sequence containing an unmethylated cytosine linked by a phosphate bond to a guanosine). Double-stranded RNAs and oligonucleotides containing palindromic or poly(dG) sequences have also been shown to be immunostimulatory.

The CpG's can include nucleotide modifications/analogs such as phosphorothioate modifications and can be double-stranded or single-stranded. The CpG sequence may be directed to TLR9, such as the motif GTCGTT or TTCGTT. The CpG sequence may be specific for inducing a Th1 immune response, such as a CpG-A ODN, or it may be more specific for inducing a B cell response, such a CpG-B ODN. Preferably, the CpG is a CpG-A ODN.

Preferably, the CpG oligonucleotide is constructed so that the 5′ end is accessible for receptor recognition. Optionally, two CpG oligonucleotide sequences may be attached at their 3′ ends to form “immunomers”. A particularly useful adjuvant based around immunostimulatory oligonucleotides is known as IC31®. Thus an adjuvant used with the invention may comprise a mixture of (i) an oligonucleotide {e.g. between 15-40 nucleotides) including at least one (and preferably multiple) CpI motifs (i.e. a cytosine linked to an inosine to form a dinucleotide), and (ii) a polycationic polymer, such as an oligopeptide (e.g. between 5-20 amino acids) including at least one (and preferably multiple) Lys-Arg-Lys tripeptide sequence(s). The oligonucleotide may be a deoxynucleotide comprising the 26-mer sequence 5′-(dIdC)₁₃-3′ (SEQ ID NO: 32). The polycationic polymer may be a peptide comprising the 11-mer amino acid sequence KLKLLLLLKLK (SEQ ID NO: 33).

Polycationic compounds derived from natural sources include HIV-REV or HIV-TAT (derived cationic peptides, antennapedia peptides, chitosan or other derivatives of chitin) or other peptides derived from these peptides or proteins by biochemical or recombinant production. Other preferred polycationic compounds are cathelin or related or derived substances from cathelin. For example, mouse cathelin is a peptide, which has the amino acid sequence NH₂-RLAGLLRKGGEKIGEKLKKIGQKIKNFFQKLVPQPE-COOH (SEQ ID NO: 31). Related or derived cathelin substances contain the whole or parts of the cathelin sequence with at least 15-20 amino acid residues. Derivations may include the substitution or modification of the natural amino acids by amino acids which are not among the 20 standard amino acids. Moreover, further cationic residues may be introduced into such cathelin molecules. These cathelin molecules are preferred to be combined with the antigen. These cathelin molecules surprisingly have turned out to be also effective as an adjuvant for an antigen without the addition of further adjuvants. It is therefore possible to use such cathelin molecules as efficient adjuvants in vaccine formulations with or without further immune activating substances.

Bacterial ADP-ribosylating toxins and detoxified derivatives thereof may be used as adjuvants in the invention. Preferably, the protein is derived from E. coli (E. coli heat labile enterotoxin “LT”), Vibrio cholerae (Cholera toxin “CT”), or Bordetella pertussis (Pertussis toxin “PT”). The use of detoxified ADP-ribosylating toxins as mucosal adjuvants and as parenteral adjuvants is known. The toxin or toxoid is preferably in the form of a holotoxin, comprising both A and B subunits. Preferably, the A subunit contains a detoxifying mutation; preferably the B subunit is not mutated. Preferably, the adjuvant is a detoxified LT mutant such as LT-K63, LT-R72, LT-G192 or dmLT. A useful CT mutant is CT-E29H.

F. Human Immunomodulators

Human immunomodulators suitable for use as adjuvants in the invention include cytokines such as interleukins (e.g. IL-1, IL-2, IL-4, IL-5, IL-6, IL-7, IL-12, etc.), interferons (e.g. interferon-γ), macrophage colony stimulating factor and tumor necrosis factor. A preferred immunomodulator is IL-12.

G. Bioadhesives and Mucoadhesives

Bioadhesives and mucoadhesives may also be used as adjuvants in the invention. Suitable bioadhesives include esterified hyaluronic acid microspheres or mucoadhesives such as cross-linked derivatives of polyacrylic acid, polyvinyl alcohol, polyvinyl pyrollidone, polysaccharides and carboxymethylcellulose. Chitosan and derivatives thereof may also be used as adjuvants in the invention.

H. Microparticles

Microparticles may also be used as adjuvants in the invention. Microparticles (i.e. a particle of ˜100 nm to ˜150 μm in diameter, more preferably ˜200 nm to ˜30 μm in diameter, and most preferably ˜500 nm to ˜10 μm in diameter) formed from materials that are biodegradable and non-toxic (e.g., a poly(α-hydroxy acid), a polyhydroxybutyric acid, a polyorthoester, a polyanhydride, a polycaprolactone, a poly(lactide-co-glycolide) etc.), wherein poly(lactide-co-glycolide) are preferred, optionally treated to have a negatively-charged surface (e.g. with SDS) or a positively-charged surface (e.g., with a cationic detergent, such as CTAB).

I. Liposomes

Examples of liposome formulations suitable for use as adjuvants are known.

J. Polyoxyethylene Ether and Polyoxyethylene Ester Formulations

Adjuvants suitable for use in the invention include polyoxyethylene ethers and polyoxyethylene esters. Such formulations further include polyoxyethylene sorbitan ester surfactants in combination with an octoxynol as well as polyoxyethylene alkyl ethers or ester surfactants in combination with at least one additional non-ionic surfactant such as an octoxynol. Preferred polyoxyethylene ethers are selected from the following group: polyoxyethylene-9-lauryl ether (laureth 9), polyoxyethylene-9-steoryl ether, polyoxytheylene-8-steoryl ether, polyoxyethylene-4-lauryl ether, polyoxyethylene-35-lauryl ether, and polyoxyethylene-23-lauryl ether.

K. Muramyl Peptides

Examples of muramyl peptides suitable for use as adjuvants in the invention include N-acetyl-muramyl-L-threonyl-D-isoglutamine (thr-MDP), N-acetyl-normuramyl-L-alanyl-D-isoglutamine (nor-MDP), and N-acetylmuramyl-L-alanyl-D-isoglutaminyl-L-alanine-2-(1′-2′-dipalmitoyl-5n-glycero-3-hydroxyphosphoryloxy)-ethylamine MTP-PE).

L. Imidazoquinolone Compounds.

Examples of imidazoquinolone compounds suitable for use as adjuvants in the invention include Imiquimod and its homologues (e.g., “Resiquimod 3M”).

The invention may also comprise combinations of aspects of one or more of the adjuvants identified above.

Preferably, the immunostimulatory compound in the pharmaceutical preparation according to the present invention is selected from the group of polycationic substances, especially polycationic peptides, immunostimulatory nucleic acids molecules, preferably immunostimulatory deoxynucleotides, oil-in-water or water-in-oil emulsions, MF59, alum, alum salts, Freund's complete adjuvant, Freund's incomplete adjuvant, neuroactive compounds, especially human growth hormone, or combinations thereof.

The use of an aluminium hydroxide and/or aluminium phosphate adjuvant is particularly preferred, and antigens are generally adsorbed to these salts.

Also, the pharmaceutical composition in accordance with the present invention is a pharmaceutical composition which comprises at least any of the following compounds or combinations thereof: the nucleic acid molecules according to the present invention, the polypeptides according to the present invention in their diverse embodiments, the vector according to the present invention, the cells according to the present invention, the antibody according to the present invention, the functional nucleic acids according to the present invention and the binding peptides such as the anticalines and high-affinity binding peptides and peptide aptamers, respectively, according to the present invention, any agonists and antagonists according to the present invention, preferably screened as described herein. In connection therewith, any of these compounds may be employed in combination with a non-sterile or sterile carrier or carriers for use with cells, tissues or organisms, such as a pharmaceutical carrier suitable for administration to a subject. Such carriers may include, but are not limited to, saline, buffered saline, dextrose, water, glycerol, ethanol and combinations thereof. The formulation should suit the mode of administration.

The pharmaceutical compositions of the present invention may be administered in any effective, convenient manner including, for instance, administration by topical, oral, anal, vaginal, intravenous, intraperitoneal, intramuscular, subcutaneous, intranasal, intratracheal or intradermal routes, among others.

In therapy or as a prophylactic, the active agent of the pharmaceutical composition of the present invention may be administered to an individual as an injectable composition, for example as a sterile aqueous dispersion, preferably isotonic.

Alternatively the composition, preferably the pharmaceutical composition may be formulated for topical application, for example in the form of ointments, creams, lotions, eye ointments, eye drops, ear drops, mouthwash, impregnated dressings and sutures and aerosols, and may contain appropriate conventional additives, including, for example, preservatives, solvents to assist drug penetration, and emollients in ointments and creams. Such topical formulations may also contain compatible conventional carriers, for example cream or ointment bases, and ethanol or oleyl alcohol for lotions. Such carriers may constitute from about 1% to about 98% by weight of the formulation; more usually they will constitute up to about 80% by weight of the formulation.

In addition to the therapy described above, the compositions of this invention may be used generally as a wound treatment agent to prevent adhesion of bacteria to matrix proteins exposed in wound tissue and for prophylactic use in dental treatment as an alternative to, or in conjunction with, antibiotic prophylaxis.

In a preferred embodiment the pharmaceutical composition is a vaccine composition. Preferably, such vaccine composition is conveniently in injectable form. Conventional adjuvants may be employed to enhance the immune response. A suitable unit dose for vaccination with a protein antigen is for adults between 0.02 μg and 3 μg antigen per kg body weight and for children between 0.2 μg and 10 μg antigen per kg body weight, and such dose is preferably administered 1 to 3 times at intervals of 2 to 24 weeks.

At the indicated dose range, no adverse toxicological effects are expected with the compounds of the invention, which would preclude their administration to suitable individuals.

The pharmaceutical composition can contain a range of different antigens. Examples of antigens are whole-killed or attenuated organisms, subfractions of these organisms, proteins, or, in their most simple form, peptides. Antigens can also be recognized by the immune system in the form of glycosylated proteins or peptides and may also be or contain polysaccharides or lipids. Short peptides can be used, since cytotoxic T-cells (CTL) recognize antigens in the form of short, usually 8-11 amino acids long, peptides in conjunction with major histocompatibility complex (MHC). B cells can recognize linear epitopes as short as 4 to 5 amino acids, as well as three-dimensional structures (conformational epitopes).

In a preferred embodiment, the pharmaceutical composition of the third aspect additionally comprises a hyperimmune serum-reactive antigen against a Borrelia protein or an active fragment or variant thereof, such as, e.g., the antigens, fragments and variants as described in WO 2008/031133.

According to the invention, the pharmaceutical composition according to the third aspect may be used as a medicament, particularly as a vaccine, particularly in connection with particularly a disease or diseased condition which is caused by, linked or associated with Borrelia.

Borrelia belongs to the family Spirochaetaceae, which is subdivided into the medically important genera Treponema, Leptospira and Borrelia. B. burgdorferi s.l. is a spiral-shaped, vigorously motile gram-negative bacterium, about 10-20 μm long and 0.2-0.5 μm wide, that grows under microaerophilic conditions. The spirochetal cell wall consists of a cytoplasmic membrane surrounded by peptidoglycan and several flagella and then by a loosely-associated outer membrane.

Lyme borreliosis generally occurs in stages characterized by different clinical manifestations, with remissions and exacerbations. Stage 1, early infection, consists of a localized infection of the skin, followed within days or weeks by stage 2, disseminated infection, and months to years later by stage 3, persistent infection. However, the infection is variable; some patients have only localized infections of the skin, while others display only later manifestations of the illness, such as arthritis. Different clinical syndromes of Lyme borreliosis are also caused by infection with diverse B. burgdorferi s.l. species. B. burgdorferi s.s. more often causes joint manifestations (arthritis) and heart problems, B. afzelii causes mainly dermal symptoms (erythema migrans; EM and acrodermatitis chronica atrophicans; ACA), whereas B. garinii is implicated in most cases of neuroborreliosis.

Localized infection—The most common symptom of stage 1 of an infection is erythema migrans, which occurs in 70-80% of infected people. This skin lesion is often followed by flu-like symptoms, such as myalgia, arthralgia, headache and fever. These non-specific symptoms occur in 50% of patients with erythema migrans.

Disseminated infection—During stage 2, the bacteria move into the blood stream from the site of infection to distal tissues and organs. Neurological, cardiovascular and arthritic symptoms that occur in this stage include meningitis, cranial neuropathy and intermittent inflammatory arthritis.

Persistent infection—Stage 3 of the infection is chronic and occurs from months to years after the tick bite. The most common symptom in North America is rheumatoid arthritis, caused by an infection with B. burgdorferi s.s. Persistent infection of the central nervous system with B. garinii causes more severe neurological symptoms during stage 3, and a persistent infection of the skin with B. afzelii results in acrodermatitis chronica atrophicans.

The pharmaceutical composition of the present invention may be used as a medicament, particularly as a vaccine, particularly in connection with a disease or disease condition which is caused by, linked with or associated with Borrelia, more preferably any pathogenic Borrelia species and more preferably in a method for treating or preventing a Borrelia infection, particularly a B. burgdorferi s.s., B. garinii, B. afzelii, B. andersonii, B. bavariensis, B. bissettii, B. valaisiana, B. lusitaniae, B. spielmanii, B. japonica, B. tanukii, B. turdi or B. sinica infection, preferably a B. burgdorferi s.s., B. afzelii or B. garinii infection.

In connection therewith, it should be noted that the various Borrelia species, including B. burgdorferi s.l., comprise several species and strains including those disclosed herein. A disease related, caused or associated with the bacterial infection to be prevented and/or treated according to the present invention includes Lyme borreliosis (Lyme disease). Further aspects, symptoms, stages and subgroups of Lyme borreliosis as well as specific groups of patients suffering from such disease as also disclosed herein, including in the introductory part, are incorporated herein by reference. More specifically, Lyme borreliosis generally occurs in stages, with remission and exacerbations with different clinical manifestation at each stage. Early infection stage 1 consists of localized infection of the skin, followed within days or weeks by stage 2, disseminated infection, and months to years later by stage 3, persistent infection. However, the infection is variable; some patients have only localized infections of the skin, while others display only later manifestations of the illness, such as arthritis.

In a fourth aspect, the present invention relates to a method of treating or preventing a Borrelia infection in a subject in need thereof, comprising the step of administering to the subject a therapeutically effective amount of a pharmaceutical composition according to the third aspect.

The term “subject” is used throughout the specification to describe an animal, preferably a mammal, more preferably a human, to whom a treatment or a method according to the present invention is provided. For treatment of those infections, conditions or disease states which are specific for a specific animal such as a human patient, the term patient refers to that specific animal Preferably, the subject is a human; however, the medical use of the composition may also include animals such as poultry including chicken, turkey, duck or goose, livestock such as horse, cow or sheep, or companion animals such as dogs or cats.

The term “effective amount” is used throughout the specification to describe an amount of the present pharmaceutical composition which may be used to induce an intended result when used in the method of the present invention. In numerous aspects of the present invention, the term effective amount is used in conjunction with the treatment or prevention. In other aspects, the term effective amount simply refers to an amount of an agent which produces a result which is seen as being beneficial or useful, including in methods according to the present invention where the treatment or prevention of a Borrelia infection is sought.

The term effective amount with respect to the presently described compounds and compositions is used throughout the specification to describe that amount of the compound according to the present invention which is administered to a mammalian patient, especially including a human patient, suffering from a Borrelia-associated disease, to reduce or inhibit a Borrelia infection.

In a preferred embodiment, the method of immunizing a subject according to the fourth aspect comprises the step of administering to the subject a therapeutically effective amount of a pharmaceutical composition of the third aspect of the current invention.

The method comprises inducing an immunological response in an individual through gene therapy or otherwise, by administering a polypeptide or nucleic acid according to the present invention in vivo in order to stimulate an immunological response to produce antibodies or a cell-mediated T cell response, either cytokine-producing T cells or cytotoxic T cells, to protect said individual from disease, whether or not that disease is already established within the individual.

The products of the present invention, particularly the polypeptides and nucleic acids, are preferably provided in isolated form, and may be purified to homogeneity. The term “isolated” as used herein means separated “by the hand of man” from its natural state; i.e., if it occurs in nature, it has been changed or removed from its original environment, or both. For example, a naturally-occurring nucleic acid molecule or a polypeptide naturally present in a living organism in its natural state is not “isolated”, but the same nucleic acid molecule or polypeptide separated from the coexisting materials of its natural state is “isolated”, as the term is employed herein. As part of or following isolation, such nucleic acid molecules can be joined to other nucleic acid molecules, such as DNA molecules, for mutagenesis, to form fusion genes, and for propagation or expression in a host, for instance. The isolated nucleic acid molecules, alone or joined to other nucleic acid molecules such as vectors, can be introduced into host cells, in culture or in whole organisms. Introduced into host cells in culture or in whole organisms, such DNA molecules still would be isolated, as the term is used herein, because they would not be in their naturally-occurring form or environment. Similarly, the nucleic acid molecules and polypeptides may occur in a composition, such as medium formulations, solutions for introduction of nucleic acid molecules or polypeptides, for example, into cells, compositions or solutions for chemical or enzymatic reactions, for instance, which are not naturally occurring compositions, and, therein remain isolated nucleic acid molecules or polypeptides within the meaning of that term as it is employed herein.

The invention is not limited to the particular methodology, protocols and reagents described herein because they may vary. Furthermore, the terminology used herein is for the purpose of describing particular embodiments only and is not intended to limit the scope of the present invention. As used herein and in the appended claims, the singular forms “a”, “an”, and the include plural reference unless the context clearly dictates otherwise. Similarly, the words “comprise”, “contain” and “encompass” are to be interpreted inclusively rather than exclusively.

Unless defined otherwise, all technical and scientific terms and any acronyms used herein have the same meanings as commonly understood by one of ordinary skill in the art in the field of the invention. Although any methods and materials similar or equivalent to those described herein can be used in the practice of the present invention, the preferred methods, and materials are described herein.

The present invention is further illustrated by the following Figures, Tables, Examples and the Sequence listing, from which further features, embodiments and advantages may be taken. As such, the specific modifications discussed are not to be construed as limitations on the scope of the invention. It will be apparent to the person skilled in the art that various equivalents, changes, and modifications may be made without departing from the scope of the invention, and it is thus to be understood that such equivalent embodiments are to be included herein.

In connection with the present invention

FIGS. 1A-1C schematically shows the production of mutant OspA fragment heterodimers according to the current invention.

FIG. 2 schematically represents the polypeptide components of one possible pharmaceutical composition of the current invention comprising three different mutant OspA heterodimers.

FIG. 3 shows the chemical structure of Pam₃Cys, an example of a fatty acid substituted cysteine, such as would be found at the N-terminus of lipidated polypeptides of the current invention.

Table 1 shows the thermal stability of the folding of mutant serotype 2 OspA fragments with disulfide bond types from D1 to D5 (see Table A-4) compared to the wild-type serotype 2 OspA fragment without disulfide bonds (D0).

Table 2 shows the protection of mice from B. afzelii infection by the Tick Challenge Method following immunization with mutant serotype 2 OspA fragments with disulfide bond types D1 to D5, including control groups of mice immunized with PBS, full-length OspA or the wild-type serotype 2 OspA fragment.

Table 3 shows the protection of mice from B. afzelii infection by the Tick Challenge Method following immunization with lipidated mutant serotype 2 OspA fragments with disulfide bond types D2, D3 and D4, including control groups of mice immunized with PBS or full-length OspA protein.

Table 4 shows the protection of mice from B. burgdorferi s.s. delivered by needle challenge or from B. afzelii delivered by tick challenge by immunization with lipidated His-tagged mutant OspA serotype 1/serotype 2 fragment heterodimer (Lip-S1D1-S2D1-His). Control groups included mice immunized with lipidated His-tagged mutant OspA serotype 1 (Lip-M1B-His) or serotype 2 (Lip-M2B-His) fragment monomers individually or with adjuvant alone.

The figures and tables which may be referred to in the specification are described below in more detail.

FIGS. 1A-1C Production of a mutant OspA heterodimer of the invention comprising mutant OspA C-terminal fragments from two different serotypes of Borrelia sp. (FIG. 1A) Schematic representation of a nucleic acid encoding a lipidated mutant OspA heterodimer. The components, from 5′ to 3′ comprise the coding sequences for a lipidation signal sequence (Lip signal), a small cysteine-containing peptide for N-terminal lipidation (Lipidation peptide=LP), a mutant C-terminal fragment of OspA with two non-native cysteines, a short linker peptide, LN1, followed by a second mutant OspA C-terminal fragment with two non-native cysteines. (FIG. 1B) The intermediate mutant OspA heterodimer polypeptide comprises the nascent product directly following translation of the nucleic acid construct. From the N- to the C-terminus, this polypeptide consists of a lipidation signal sequence (Lip signal), a cysteine-containing peptide for lipidation (LP), a mutant OspA fragment with a non-native disulfide bond, a short linker peptide, LN1, followed by a second mutant OspA fragment with a non-native disulfide bond. (FIG. 1C) The final lipidated mutant OspA heterodimer polypeptide after post-translational modification. The heterodimer, from the N- to the C-terminus, consists of a short cysteine-containing peptide with the N-terminal cysteine lipidated (indicated by “Lip”), a mutant OspA fragment stabilized by a disulfide bond, a linker peptide, LN1, and a second mutant OspA fragment stabilized by a disulfide bond. The lipidation signal sequence is cleaved off during post-translational modification of the polypeptide as shown.

FIG. 2 An example of a preferred pharmaceutical composition according to the current invention. Three mutant OspA heterodimers, each comprising mutated OspA fragments from two different Borrelia serotypes are present in the composition, together providing OspA antigens from six different Borrelia serotypes. Such a pharmaceutical composition enables simultaneous immunization against six of the most prevalent serotypes of Borrelia.

FIG. 3 Diagram of the chemical structure of Pam₃Cys, an example of a fatty acid substitution of the N-terminal cysteine of full-length wild-type OspA protein as well as of lipidated mutant OspA fragment monomers and heterodimers of the invention. During post-translational modification of a full-length OspA protein or polypeptides of the invention, the N-terminal lipidation signal sequence is cleaved off and fatty acids, most commonly three palmitoyl moieties (“Pam₃”), are enzymatically covalently attached to the N-terminal cysteine residue (the S atom of which is indicated by an arrow). The remaining residues of the polypeptide chain, which are located C-terminally from the Pam₃Cys residue, are represented by “Xn”. (Modified from Bouchon, et al. (1997) Analytical Biochemistry 246: 52-61.)

TABLE 1 Thermal stability of non-lipidated, His-tagged B. afzelii K78 mutant serotype 2 OspA fragments with different placement of disulfide bonds. Mutant serotype 2 OspA fragments with different cysteine bond types (see Table A-4) were solubilized in 50 mM Tris-HCl, 150 mM NaCl (pH 8.0) and tested for thermal stability compared with the wild-type serotype 2 OspA fragment (S2D0). The presence of a disulfide bond resulted in an increased melting temperature compared to the wild-type serotype 2 OspA fragment. Serotype 2 OspA mutant Melting temperature fragment SEQ ID NO: (° C.) S2D0-His* 1 47.6 S2D1-His 2 70.4 S2D2-His 3 54.6 S2D3-His 4 58.6 S2D4-His 5 58.4 S2D5-His 6 53.8 *see Tables A-4 and A-5 for nomenclature.

TABLE 2 Protection of mice from B. afzelii infection by the tick challenge method by immunization with non-lipidated mutant serotype 2 OspA fragments. Five non-lipidated mutant serotype 2 OspA fragments were tested for protective capacity at two different doses (30 μg and 5 μg) and compared with the wild-type serotype 2 fragment. Groups of mice immunized with adjuvant alone or with non-lipidated full-length serotype 2 OspA served as negative and positive controls, respectively. All antigens were His-tagged and non-lipidated. The data presented combine the results of several experiments performed under identical conditions. 3 × 30 μg 3 × 5 μg (data from 11 experiments) (data from 4 experiments) (all groups include Al(OH)₃) (all groups include Al(OH)₃) Infected Infected Immunogen mice total mice p-value mice total mice p-value Adjuvant alone 67 73 n/a 20 23 n/a Full-length OspA K78- 15 87 <0.001*** 0 25 <0.001*** His (SEQ ID NO: 209) S2D0-His 20 27 0.045* 5 16 0.001*** (SEQ ID NO: 1) S2D1-His 7 32 <0.001*** 1 25 <0.001*** (SEQ ID NO: 2) S2D2-His 2 29 <0.001*** 3 26 <0.001*** (SEQ ID NO: 3) S2D3-His 10 44 <0.001*** 0 21 <0.001*** (SEQ ID NO: 4) S2D4-His 6 35 <0.001*** 3 27 <0.001*** (SEQ ID NO: 5) S2D5-His 6 37 <0.001*** 2 11 <0.001*** (SEQ ID NO: 6) *significant (≤0.05), ** highly significant (≤0.01), ***extremely significant (≤0.001), Fisher's exact test, two-tailed.

TABLE 3 Protection of mice from B. afzelii infection by the Tick Challenge Method by immunization with decreasing doses of lipidated mutant serotype 2 OspA fragments. Three lipidated mutant serotype 2 OspA fragments with different disulfide bond types were tested for protective capacity. Groups of mice immunized with adjuvant alone or with non- lipidated full-length serotype 2 OspA served as negative and positive controls, respectively. All antigens were His-tagged. 3 × 3 μg 3 × 1 μg 3 × 0.3 μg (data from 3 experiments) (data from 5 experiments) (data from 4 experiments) (all groups included Al(OH)₃) (all groups included Al(OH)₃) (all groups included Al(OH)₃) Infected Infected Infected Immunogen mice Total mice p-value mice Total mice p-value mice Total mice p-value Adjuvant 22 24 n/a 33 37 n/a 28  30 n/a alone Full-length 0 14 <0.001*** 0 21 <0.001*** n/a n/a n/a OspA K78- His (SEQ ID NO: 209) Lip-S2D2- 0 17 <0.001*** 0 15 <0.001*** 0 21 <0.001*** His (SEQ ID NO: 142) Lip-S2D3- 1 15 <0.001*** 1 12 <0.001*** 5 19 <0.001*** His (SEQ ID NO: 143) Lip-S2D4- 0 8 <0.001*** 0 14 <0.001*** 0 19 <0.001*** His (SEQ ID NO: 144) * significant (<0.05), ** highly significant (<0.01), ***extremely significant (≤0.001), Fisher's exact test, two-tailed.

TABLE 4 Protection of mice from Borrelia infection by both needle challenge (B. burgdorferi s.s.) and Tick Challenge Method (B. afzelii) by immunization with lapidated His-tagged mutant serotype1/serotype 2 OspA fragment heterodimers. The lipidated His-tagged mutant serotype 1/serotype 2 OspA fragment heterodimer protein (Lip-S1D1-S2D1-His) was tested for protective capacity. Groups of mice immunized three times at two week intervals with adjuvant alone or with lipidated His-tagged mutant serotype 1 (Lip-S1D1-His) or serotype 2 (Lip-S2D1-His) OspA fragment monomers individually served as negative and positive controls, respectively. Immunized mice were challenged two weeks after the last immunization with either B. burgdorferi s.s. via needle challenge (Experiments 1-3) or with B. afzelii via infected ticks (Experiments 4-6). All antigens were lipidated and His-tagged. Needle challenge Infected/ Infected/ Infected/ (serotype 1: Total Total Total Immunogen Dose B. burgdorferi s.s.) Exp. 1 Exp. 2 Exp. 3 Lip-S1D1-S2D1- 3 × 5.0 N40 (ST1) 0/10***  0/9***   4/10** His Lip-S1D1-His 3 × 2.5 N40 (ST1) 2/10***  1/10*   4/10** Lip-S2D1-His 3 × 2.5 N40 (ST1) 1/10*** 3/10  5/10* Adjuvant alone — N40 (ST1) 10/10   8/10 10/10 Tick challenge (Serotype 2: B. afzelii) Exp. 4 Exp. 5 Exp. 6 Lip-S1D1-S2D1- 3 × 2.0 Tick (ST2) 0/10***  0/9***   0/6*** His Lip-S1D1-His 3 × 1.0 Tick (ST2) 2/10***  2/8** 2/4 Lip-S2D1-His 3 × 1.0 Tick (ST2) 1/8***   0/4**  0/4** Adjuvant alone — Tick (ST2) 9/9   8/8  7/7 P-value; Fisher's exact test, two tailed. *significant (<0.05), **highly significant (<0.01), ***extremely significant (<0.001)

EXAMPLES Example 1 Assessment of Thermal Stability of Mutant Serotype 2 OspA Fragments

Experimental Procedures

Thermal Stability

The melting temperatures (T_(m)) of non-lipidated mutant serotype 2 OspA fragment monomers were determined by the fluorescence-based thermal shift assay described by Pantoliano, et al. (J. Biomol Screen 6:429-440 (2001)). The fluorescent dye SYPRO® Orange protein gel stain (supplied as a 5000× concentrate in DMSO by Sigma, U.S.A) was used to monitor protein unfolding. In each well, 7.5 μl of SYPRO® Orange (diluted 1:1000 from the stock solution) and 17.5 μl of a solution of protein (1 μg or 2 μg) in buffer were combined. The protein samples were heated from 25° C. to 95° C. at a rate of 0.2° C./10 sec in the CFX96 Real-time Detection System (Bio-Rad, USA) and fluorescent changes were monitored. Fluorescence intensity was measured with excitation and emission wavelengths of 490 and 575 nm, respectively. The Tm was determined using the Bio-Rad CFX Manager 2.0 program. The Tm values of non-lipidated His-tagged serotype 2 OspA mutant fragments were measured in four different buffer systems: 50 mM Tris-HCl, 150 mM NaCl (pH 9.0); 50 mM Tris-HCl, 150 mM NaCl (pH 8.0); PBS (pH 7.4); and 25 mM HEPES, 150 mM NaCl (pH 6.5), using the non-lipidated serotype 2 OspA wild-type fragment (52D0) as a control.

Results

In all cases, mutant serotype 2 OspA fragments with an introduced cysteine bond had higher melting temperatures than the wild-type serotype 2 OspA fragment (S2D0) (see Table 1). The melting temperatures were tested in four different buffer systems with similar results (data for proteins dissolved in 50 mM Tris-HCl, 150 mM NaCl (pH 8.0) is shown in Table 1), indicating that the stability of the proteins is similar over a wide pH range. This result lends credence to the hypothesis that the introduced disulfide bond stabilizes the OspA fragment.

Example 2 Protection of Mice from Infection with B. afzelii in the Tick Challenge Method by Immunization with Non-lipidated His-tagged Mutant Serotype 2 OspA Fragment Monomers

Experimental Procedures

Cloning and Expression of Recombinant Proteins

The wild-type serotype 2 OspA fragment as well as the serotype 2 mutant OspA fragments with cysteine bond types 1-5 (SEQ ID NOs: 1, 2, 3, 4, 5 and 6, respectively), were codon-optimized for E. coli expression by GenScript, USA. The non-lipidated serotype 2 mutant OspA fragments were C-terminally histidine-tagged for purification purposes. Gene fragments were cloned into the pET28b(+) vector (Novagen, USA), a vector containing a Kanamycin resistance cassette as well as a T7 promoter. The monomers were expressed in BL21 Star™(DE3) cells (Invitrogen, USA) at 37° C. by the addition of IPTG. Cells were collected after 4 h by centrifugation and the pellet was stored at −70° C. for up to 12 months prior to further processing.

Purification of Non-lipidated His-tagged Wild-type and Mutant OspA Fragment Monomer Proteins

Cells were disrupted mechanically by high-pressure homogenization and the soluble fraction containing the His-tagged OspA fragments was applied to a Ni-sepharose column (Ni Sepharose™ 6 Fast Flow; GE Healthcare, United Kingdom) and the His-tagged OspA fragments were eluted on an Imidazole gradient (0-250 mM). Pooled fractions were further purified over a gel filtration column (Superdex 200, GE Healthcare) followed by a buffer exchange column (Sephadex G-25, GE Healthcare). His-tagged OspA fragment peaks were pooled on the basis of the analytical size exclusion column and reversed phase chromatography. After sterile filtration, the purified proteins were stored at −20° C. until formulation.

Immunization of Mice

Female C3H/HeN (H-2^(k)) mice were used for all studies (Harlan, Italy). Prior to each challenge, groups of five 8-week-old mice were bled via the tail vein and pre-immune sera were prepared and pooled. Five non-lipidated mutant serotype 2 OspA fragment proteins (S2D1-5, SEQ ID NOs: 2, 3, 4, 5 and 6, respectively), were tested in fifteen separate experiments. Three subcutaneous (s c) immunizations of 100 μL, were administered at two week intervals. Doses used were 30 and 5 μg of the respective protein, tested in 11 and 4 experiments respectively. All formulations included aluminium hydroxide (Al(OH)₃) at a final concentration of 0.15%. One week after the third immunization, blood was collected and hyper-immune sera were prepared. In each experiment, one group injected with PBS formulated with Al(OH)₃ was included as a negative control and one group of mice was immunized with S2D0, the wild-type C-terminal OspA fragment from B. afzelii strain K78 (SEQ ID NO: 1). Another group immunized with a non-lipidated full-length wild-type OspA protein from B. afzelii, strain K78 (SEQ ID NO: 209), also formulated with 0.15% Al(OH)₃, was included as positive control in each animal study. All animal experiments were conducted in accordance with Austrian law (BGB1 Nr. 501/1989) and approved by “Magistratsabteilung 58”.

Tick Challenge of Immunized Mice and Collection of Sera and Tissues (Herein Referred to Also as “Tick Challenge Method”)

Tick challenge of immunized mice was done two weeks after the last immunization. In order to challenge the immunized mice with B. afzelii, the hair of the back of each mouse was removed with Veet® Cream (Reckitt Benckiser, United Kingdom) and a small ventilated container was glued to the skin with super glue (Pattex, Germany). Thereafter, one or two I. ricinus nymphs infected with B. afzelii, strain IS1, were applied per mouse, allowed to attach and feed to depletion. The feeding status was monitored for each individual tick and only mice where at least one fully-fed tick was collected were included in the final readout. No distinction was made between mice where one or two fully-fed ticks were collected.

Six weeks after the tick application, blood was collected by orbital bleeding and final sera were prepared and used for VlsE ELISA analysis to determine infection status. The mice were then sacrificed by cervical dislocation and one ear from each mouse was collected, DNA extracted and subjected to nested PCR analysis to identify Borrelia in tissue.

Infection Readout

Only mice where the applied tick(s) fed to completion and could be collected were included in the final readout of the experiment. The mice were sacrificed 6 weeks after tick application and organs as well as final sera were collected. The final infection readout was based on two different analyses (nested PCR targeting the 16S-23S intergenic spacer and VlsE (IR6) ELISA as described in detail below).

Nested PCR Targeting the 16S-23S Intergenic Spacer

One ear from each mouse was subjected to DNA extraction and purification using the DNeasy Blood and Tissue Kit (Qiagen, Germany) according to the manufacturer's instructions, with the following modification. Each ear was digested over night at 60° C. in recombinant Proteinase K, PCR grade (Roche, 14-22 mg/mL). The DNA was eluted in 50 μL deionized sterile water and stored at −20° C. until further analysis. As a negative control, one empty purification column was included in each DNA extraction and purification and the eluate subjected to nested PCR. All DNA extracts were screened for the presence of Borrelia DNA by a nested PCR procedure, comprising 40 cycles of 94° C. for 30 s, 56° C. for 30 s and 72° C. for 60 s using the primers; Forward 5′-GTATGTTTAGTGAGGGGGGTG-3′ (SEQ ID NO: 26) and Reverse 5′-GGATCATAGCTCAGGTGGTTAG-3′ (SEQ ID NO: 27). From the reaction volume of 10 μL, 1 μL was used as template for the nested PCR reaction. The nested PCR step comprised 25 cycles of 94° C. for 30 s, 60° C. for 30 s and 72° C. for 60 s using the primers; Forward nested 5′-AGGGGGGTGAAGTCGTAACAAG-3′ (SEQ ID NO: 28) and Reversed nested 5′-GTCTGATAAACCTGAGGTCGGA-3′ (SEQ ID NO: 29). Of the final reaction volume, 5 μL was separated on a 1% agarose gel containing ethidium bromide and bands were visualized in UV-light.

In each PCR analysis, DNA purified from an in vitro grown culture of B. afzelii strain K78 was used as a positive control template. In addition, PBS was used instead of extracted DNA as negative control. Five microliters of the final product was separated on a 1% agarose gel containing ethidium bromide and bands were visualized in UV-light.

ELISA with the Invariable Region 6 (IR6) of the Variable Major Protein-Like Sequence E Protein (VlsE)

A biotinylated 25-mer peptide (MKKDDQIAAAMVLRGMAKDGQFALK) (SEQ ID NO: 30) derived from the sequence of B. garinii strain IP90 was used for analysis (Liang F T, et al. (1999) J Immunol. 163:5566-73). Streptavidin pre-coated 96-well ELISA plates (Nunc, Denmark) were coated with 100 μL/well (1 μg/mL) biotinylated peptide in PBS supplemented with 0.1% Tween 20 (PBS/0.1T). The plates were incubated overnight at 4° C. After coating with the peptide, the plates were washed once with PBS/0.1T. The plates were then blocked for one hour at room temperature (RT) with 100 μL/well of PBS+2% BSA, before being washed again with PBS/0.1T. Reactivity of post-challenge sera to the peptide was tested at 1:200, 1:400 and 1:800 dilutions in PBS+1% BSA. Plates were incubated for 90 min at RT before being washed three times with PBS/0.1T. Each well then received 50 μL of 1.3 μg/mL polyclonal rabbit anti-mouse IgG conjugated to HRP (Dako, Denmark) in PBS+1% BSA. The plates were then incubated for 1 h at RT. After three washes with PBS/0.1T, ABTS (50 μl/well) was added as substrate (Sigma-Aldrich, USA) and color was allowed to develop for 30 min. Absorbance was measured at 405 nm. All sera were tested in duplicate; negative controls included PBS instead of sera, as well as plates not coated with the peptide. Sera from mice shown to be culture positive for B. afzelii infection were used as positive controls.

Results

Levels of Protection in the Tick Challenge Method

Extremely significant levels of protection (p-value 0.001) were seen for all five stabilized OspA B. afzelii fragments at both of the doses tested (30 μg and 5 μg, see Table 2). The high infection rates in the PBS control group indicate that the ticks were infected with high frequency. Additionally, the positive control, non-lipidated full-length OspA from B. afzelii strain K78, was very protective. Together these control groups indicate the high reliability of the experimental readout.

Protection data from the seven experiments are combined and summarized in Table 2. The two methods employed to verify infection, namely ELISA and PCR, gave virtually identical results (not shown), demonstrating the robustness of these methods for assessment of infection in the tick challenge method.

Example 3 Protection of Mice from Infection with B. afzelii by the Tick Challenge Method by Immunization with Lipidated Mutant Serotype 2 OspA Fragments

Experimental Procedures

Cloning and Expression of Lipidated His-tagged Mutant OspA Fragment Proteins

The serotype 2 mutant OspA fragments with cysteine bond types 2, 3 and 4 (SEQ ID NOs: 142, 143 and 144, respectively) were modified by the addition of a lipidation signal sequence derived from OspA (SEQ ID NO: 14) and followed directly C-terminally by a CKQN peptide (SEQ ID NO: 211) to provide an N-terminal cysteine for lipidation. All mutant OspA fragments were C-terminally histidine-tagged for purification purposes. Gene fragments were cloned into the pET28b(+) vector (Novagen), a vector containing a Kanamycin resistance cassette as well as a T7 promoter. The lipidated monomers were expressed in BL21 Star™(DE3) cells (Invitrogen) and after induction by IPTG, the growth temperature of the cells was lowered from 37° C. to 25° C. to promote efficient post-translational processing of the proteins. Cells were collected after 4 h by centrifugation and the pellet was stored at −70° C. for up to 12 months prior to further processing.

Purification of Lipidated His-tagged Wild-type and Mutant OspA Fragment Monomer Proteins

Cells were disrupted mechanically by high-pressure homogenization and the lipidated His-tagged OspA fragment monomer polypeptides were enriched in the lipid phase by phase separation, using Triton X-114 as detergent. Subsequently, the diluted detergent phase (20 to 30 fold) was applied to a Ni-sepharose column (Ni Sepharose™ 6 Fast Flow; GE Healthcare) and the lipidated His-tagged OspA fragments were eluted by Imidazole gradient (0-250 mM) elution. Pooled fractions were further purified over a gel filtration column (Superdex 200, GE Healthcare) followed by a buffer exchange column (Sephadex G-25, GE Healthcare). Lipidated His-tagged OspA fragment peaks were pooled on the basis of the analytical size exclusion column and reversed phase chromatography. After sterile filtration, the purified proteins were stored at −20° C. until formulation.

Immunization of Mice

Three lipidated mutant OspA proteins (Lip-S2D2-His, Lip-S2D3-His and Lip-S2D4-His) were expressed and purified as described above. In vivo protection studies were performed also as above using PBS and non-lipidated full-length serotype 2 OspA as negative and positive controls, respectively. All immunogens were formulated with 0.15% Al(OH)₃. Mice were injected subcutaneously three times at two week intervals with formulations containing 3.0 μg, 1.0 μg or 0.3 μg antigen and challenged with infected ticks two weeks after the last immunization. Mice were sacrificed six weeks following tick challenge and infection was assessed.

Results

Levels of Protection in the Tick Challenge Method

All three lipidated mutant OspA fragments conferred extremely significant levels of protection (p-value≤0.001) from B. afzelii challenge even at the lowest tested dose (Table 3). Infection rates in the PBS groups were high, indicating that the ticks were infected to a high frequency. The positive control antigen, full-length non-lipidated OspA from B. afzelii strain K78, was also very protective. Together, these control groups indicate the high reliability of the method of infection and thus give high credibility to the results observed following immunization with the lipidated mutant OspA fragments.

Example 4 Protection of Mice from Borrelia Infection by Immunization with Lipidated His-tagged Mutant OspA Fragment Heterodimers of Different Serotypes

Experimental Procedures

Cloning and Expression of Lipidated His-tagged Mutant OspA Fragment Heterodimers

The mutant OspA fragment monomers from B. burgdorferi s.s. strain B31, B. afzelii strain K78, B. garinii strain PBr, B. bavariensis strain PBi, B. garinii strain PHEi and B. garinii strain DK29 were codon-optimized for E. coli expression by GenScript, USA. The hLFA-1-like epitope (aa 164-174, SEQ ID NO: 17) of the OspA from B. burgdorferi s.s. strain B31 was replaced by a non-hLFA-1-like sequence NFTLEGKVAND from B. afzelii strain K78 (SEQ ID NO: 18). The lipidation signal sequence added to the mutant OspA fragment heterodimers was derived from the E. coli major outer membrane lipoprotein, Lpp, and was followed directly C-terminally by a CSS peptide (SEQ ID NO: 210) to provide an N-terminal cysteine for lipidation. The mutant OspA fragment heterodimers were generated by fusing different mutant OspA fragment monomers as described above via a 21 amino acid linker sequence, originating from two separate loop regions of the N-terminal half of OspA from B. burgdorferi s.s. strain B31 (“LN1”; aa 65-74 and aa 42-53 with an amino acid exchange of D53S, SEQ ID NO: 184). The heterodimers were constructed with a His-tag for purification purposes. Gene fragments were cloned into the pET28b(+) vector (Novagen), a vector containing a Kanamycin resistance cassette as well as a T7 promoter. The lipoproteins of the stabilized heterodimers were expressed in BL21 Star™(DE3) cells (Invitrogen) and after induction by IPTG, the growth temperature of the cells was lowered from 37° C. to 25° C. to promote efficient post-translational processing of the proteins. Cells were collected after 4 h by centrifugation and the pellet was stored at −70° C. for up to 12 months prior to further processing.

Purification of Lipidated His-tagged Mutant OspA Fragment Heterodimers

Cells were disrupted mechanically by high-pressure homogenization and the lipidated His-tagged mutant OspA fragment heterodimers were enriched in the lipid phase by phase separation, using Triton X-114 as detergent. Subsequently, the diluted detergent phase (20 to 30 fold) was applied to a Ni-sepharose column (Ni Sepharose™ 6 Fast Flow; GE Healthcare) and the lipidated His-tagged OspA heterodimers were eluted by Imidazole gradient (0-250 mM) elution. Pooled fractions were further purified over a gel filtration column (Superdex 200, GE Healthcare) followed by a buffer exchange column (Sephadex G-25, GE Healthcare). The lipidated His-tagged mutant OspA heterodimer peaks were pooled on the basis of the analytical size exclusion column and reversed phase chromatography. After sterile filtration, the purified heterodimers were stored at −20° C. until formulation.

Immunization of Mice

Female C3H/HeN mice (Janvier, France) were used for all studies. Prior to each challenge, groups of ten 8-week-old mice were bled via the facial vein and pre-immune sera were prepared and pooled. Three subcutaneous (s.c.) immunizations of 100 μL each were administered at two week intervals. Each dose contained either 2 μg or 5 μg of the heterodimer protein Lip-S1D1-S2D1-His (SEQ ID NO: 49), or 1.0 μg or 2.5 μg of the respective monomer proteins, formulated with aluminium hydroxide (Al(OH)₃) at a final concentration of 0.15%. One week after the third immunization, blood was collected from the facial vein and hyper-immune sera were prepared. In each experiment, one group immunized with Al(OH)₃ alone was included as a negative control. All animal experiments were conducted in accordance with Austrian law (BGB1 Nr. 501/1989) and approved by “Magistratsabteilung 58”.

Tick Challenge of Immunized Mice and Collection of Sera and Tissues (Herein Referred to Also as “Tick Challenge Method”)

In order to challenge the immunized mice with B. afzelii, the hair of the back of each mouse was removed with Veet® Cream (Reckitt Benckiser) and a small ventilated container was glued to the skin with super glue (Pattex). Thereafter, one or two I. ricinus nymphs infected with B. afzelii, strain IS1, were applied per mouse, allowed to attach and feed until they were fully engorged and dropped off. The feeding status was monitored for each individual tick and only mice from which at least one fully fed tick was collected were included in the final readout.

Needle Challenge of Immunized Mice with In Vitro Grown Borrelia

Two weeks after the last immunization, the mice were challenged s.c. with Borrelia diluted in 100 μL Borrelia growth medium (BSK II). The challenge doses were strain-dependent, the virulence of the individual strains being assessed by challenge experiments for determination of ID₅₀. Doses employed for needle challenge experiments ranged from 20 to 50 times the ID₅₀.

Sacrifice of Mice and Collection of Material

Four weeks after needle challenge with B. burgdorferi s.s. or six weeks after tick challenge with B. afzelii, mice were sacrificed by cervical dislocation. The blood was collected by orbital bleeding and final sera were prepared and used for VlsE ELISA to determine infection status. In addition, one ear from each mouse was collected, and DNA was extracted and subjected to qPCR for identification of Borrelia. The final infection readout was based on two different analyses (qPCR targeting recA and VlsE ELISA).

ELISA with the Invariable Region 6 (IR6) of VlsE

A biotinylated 25-mer peptide (MKKDDQIAAAMVLRGMAKDGQFALK) (SEQ ID NO: 30) derived from the sequence of B. garinii strain IP90 was used for the analysis (Liang F T, Alvarez A L, Gu Y, Nowling J M, Ramamoorthy R, Philipp M T. An immunodominant conserved region within the variable domain of VlsE, the variable surface antigen of Borrelia burgdorferi. J Immunol. 1999; 163:5566-73). Streptavidin pre-coated 96-well ELISA plates (Nunc), were coated with 100 μL/well (1 μg/mL) peptide in PBS supplemented with 0.1% Tween (PBS/0.1T). The plates were incubated overnight at 4° C. After coating with the peptide, the plates were washed once with PBS/0.1T. The plates were then blocked for one hour at room temperature (RT) with 100 μL/well of PBS+2% BSA, before being washed again with PBS/0.1T. Reactivity of post-challenge sera to the peptide was tested at 1:200, 1:400 and 1:800 dilutions in PBS+1% BSA. Plates were incubated for 90 min at RT before being washed three times with PBS/0.1T. Each well then received 50 μL of 1.3 μg/mL polyclonal rabbit anti-mouse IgG conjugated to HRP (Dako) in PBS+1% BSA. The plates were then incubated for 1 h at RT. After three washes with PBS/0.1T, ABTS (50 μL/well) was added as substrate (Sigma-Aldrich) and color was allowed to develop for 30 min Absorbance was measured at 405 nm. All sera were tested in duplicate. Negative controls included PBS instead of sera as well as plates not coated with the peptide. Sera from mice shown to be culture positive for B. afzelii infection were used as positive controls.

qPCR Targeting recA

Oligonucleotide primers were designed for the recA gene in a manner that they could be used in qPCR for identification of all relevant Borrelia species causing Lyme borreliosis (forward: CATGCTCTTGATCCTGTTTA, SEQ ID NO: 213 reverse: CCCATTTCTCCATCTATCTC, SEQ ID NO: 215). The recA fragment was cloned from the B. burgdorferi s.s. strain N40 into pET28b(+), to be used as standard in each reaction. The chromosomal DNA extracted from mouse ears was diluted 1:8 in water in order to reduce matrix effects observed with undiluted DNA. A master mix consisting of 10 μL, SSoAdvanced™ SYBR® Green Supermix, 0.3 μL, of each primer (10 μM), and 7.4 μL, water was prepared for each experiment. Eighteen μL, of master mix was mixed with 2 μL, of the diluted DNA extracted from either bladder or ear in micro-titer plates and the DNA was amplified using a CFX96 real-time PCR detection system (Bio-Rad, USA). The DNA was denatured for 3 minutes at 95° C., followed by 50 cycles of 15 seconds at 95° C. and 30 seconds at 55° C. After amplification, the DNA was prepared for the melting curve analysis by denaturation for 30 seconds at 95° C. followed by 2 minutes at 55° C. The melting curve analysis was performed by 5 seconds incubation at 55° C., with a 0.5° C. increase per cycle, and 5 seconds at 95° C. On each plate, four no-template controls (NTC) were included as well as a standard curve in duplicate with template copy numbers ranging from 10 to 10,000.

Results

The lipidated His-tagged mutant OspA fragment heterodimer (Lip-S1D1-S2D1-His) was tested for protective capacity in six separate experiments. Mice were challenged with either the B. burgdorferi s.s. strain N40 (needle challenge) or the B. afzelii strain IS1 (tick challenge) in three experiments each. All experiments included mice immunized with the individual respective lipidated His-tagged mutant OspA monomers as positive control groups (Lip-S1D1-His and Lip-S2D1-His) and mice immunized with adjuvant alone as a negative control group. For challenge with ticks, 1-2 ticks were applied per mouse and only mice from which at least one tick fed until fully engorged were included in the final readout. However, no distinction was made between mice from which one or two fully fed ticks were collected. The protection data from the six experiments are summarized in Table 4.

The lipidated His-tagged OspA heterodimer (Lip-S1D1-S2D1-His) showed highly statistically-significant protection (Fisher's exact test, two-tailed) in all six experiments against both challenge species as compared to the negative control group. The infectious status of each mouse was determined using either VlsE ELISA alone (experiments 1-3) or in combination with recA qPCR (experiments 4-6). In cases where both methods were used, a mouse was regarded as infected when at least one method gave a positive result. The level of protection conferred by the lipidated His-tagged mutant OspA fragment heterodimer (Lip-S1D1-S2D1-His) was equal to or better than the protection conferred by either of the lipidated His-tagged mutant OspA fragment monomers individually.

Example 5 Protection of Mice from Infection with Borrelia by Immunization with Lipidated Non-His-tagged Mutant OspA Fragment Heterodimers of Different Serotypes

Cloning and Expression of Lipidated Non-His-tagged Mutant OspA Fragment Heterodimers

The constructs made as described in Example 4 were used for the generation of His-less constructs by the introduction of a stop codon by PCR amplification. Gene fragments were cloned into the pET28b(+) vector (Novagen), a vector containing a Kanamycin resistance cassette as well as a T7 promoter. The lipoproteins of the stabilized heterodimers were expressed in BL21 Star™(DE3) cells (Invitrogen) and after induction by IPTG, the growth temperature of the cells was lowered from 37° C. to 25° C. to promote efficient post-translational processing of the proteins. Cells were collected after 4 h by centrifugation and the pellet was stored at −70° C. for up to 12 months prior to further processing.

Purification of Lipidated Non-His-tagged Mutant OspA Fragment Heterodimers

Cells were disrupted mechanically by high-pressure homogenization and the lipidated mutant OspA fragment heterodimers were enriched in the lipid phase by phase separation, using Triton X-114 as detergent. Subsequently, the diluted detergent phase was subjected to anion exchange chromatography. The resulting flow-through was subjected to cation exchange chromatography and the lipidated proteins eluted from the column. The eluate was subjected to further purification over a gel filtration column (Superdex 200, GE Healthcare) followed by a buffer exchange column (Sephadex G-25, GE Healthcare). The lipidated mutant OspA heterodimer peaks were pooled on the basis of the analytical size exclusion column and reversed phase chromatography. After sterile filtration, the purified heterodimers were stored at −20° C. until formulation.

Immunization of Mice

Female C3H/HeN mice will be used for all studies. Prior to each challenge, groups of ten 8-week-old mice will be bled via the facial vein and pre-immune sera will be prepared and pooled. Three s.c. immunizations of 100 μL each will be administered at two week intervals. Each dose will contain 5 μg of the respective heterodimer proteins: Lip-S1D1-S2D1 (SEQ ID NO: 186), Lip-S4D1-S3D1 (SEQ ID NO: 194) and Lip-S5D1-S6D1 (SEQ ID NO: 190) or 2.5 μg of the respective monomer proteins, formulated with aluminium hydroxide (Al(OH)₃) at a final concentration of 0.15%. One week after the third immunization, blood will be collected from the facial vein and hyper-immune sera will be prepared. In each experiment, one group immunized with PBS formulated with Al(OH)₃ will be included as a negative control. All animal experiments will be conducted in accordance with Austrian law (BGB1 Nr. 501/1989) and approved by “Magistratsabteilung 58”.

Needle Challenge of Immunized Mice with In Vitro Grown Borrelia

Two weeks after the last immunization, the mice will be challenged s.c. with Borrelia diluted in 100 μL Borrelia growth medium (BSKII). The challenge doses are strain-dependent, the virulence of the individual strains will require assessment by challenge experiments for determination of ID₅₀. Doses employed for needle challenge experiments will range from 20 to 50 times the ID₅₀. Four weeks after needle challenge, mice will be sacrificed and blood and tissues will be collected for readout methods to determine the infection status.

The entire contents of all of the references (including literature references, issued patents, published patent applications, and co-pending patent applications) cited throughout this application are hereby expressly incorporated by reference. 

What is claimed is:
 1. A method for producing a polypeptide comprising a fragment of an outer surface protein A (OspA), wherein the OspA fragment is defined by SEQ ID NO: 216, the method comprising the following steps: a) introducing a vector encoding the polypeptide into a host cell, b) growing the host cell under conditions allowing for expression of said polypeptide, c) homogenizing said host cell, and d) subjecting the host cell homogenate to purification steps.
 2. The method according to claim 1, wherein the polypeptide comprises a heterodimer selected from the group consisting of Lip-S1D1-S2D1(SEQ ID NO: 186), Lip-S2D1-S1D1 (SEQ ID NO: 192), Lip-S1D1-S2D4 (SEQ ID NO: 198) and Lip-S2D4-S1D1 (SEQ ID NO: 203).
 3. The method according to claim 1, wherein the polypeptide consists of a heterodimer selected from the group consisting of Lip-S1D1-S2D1 (SEQ ID NO: 186), Lip-S2D1-S1D1 (SEQ ID NO: 192), Lip-S1D1-S2D4 (SEQ ID NO: 198) and Lip-S2D4-S1D1 (SEQ ID NO: 203).
 4. The method according to claim 1, wherein the vector comprises a nucleic acid molecule encoding said polypeptide.
 5. The method according to claim 4, wherein said nucleic acid molecule encoding said polypeptide is defined by SEQ ID NO:
 48. 6. The method according to claim 1, wherein said vector is pET28b(+).
 7. The method according to claim 1, wherein said host cell is E. coli.
 8. The method according to claim 7, wherein said E. coli is an E. coli BL21 cell.
 9. The method according to claim 1, wherein said purification steps comprise enriching the polypeptide in a lipid phase separation and purifying over a gel filtration column.
 10. The method according to claim 9, wherein said purification steps further comprise processing over a buffer exchange column.
 11. A method for producing a pharmaceutical composition comprising a polypeptide comprising a fragment of an outer surface protein A (OspA), wherein the OspA fragment is defined by SEQ ID NO: 216, the method comprising combining said polypeptide with one or more pharmaceutically acceptable carriers or excipients.
 12. The method according to claim 11, wherein said polypeptide comprises a heterodimer selected from the group consisting of Lip-S1D1-S2D1(SEQ ID NO: 186), Lip-S2D1-S1D1(SEQ ID NO: 192), Lip-S1D1-S2D4 (SEQ ID NO: 198) and Lip-S2D4-S1D1(SEQ ID NO: 203).
 13. The method according to claim 11, wherein said polypeptide consists of a heterodimer selected from the group consisting of Lip-S1D1-S2D1 (SEQ ID NO: 186), Lip-S2D1-S1D1 (SEQ ID NO: 192), Lip-S1D1-S2D4(SEQ ID NO: 198) and Lip-S2D4-S1D1 (SEQ ID NO: 203).
 14. The method according to claim 11, wherein said pharmaceutical composition comprises Lip-S1D1-S2D1 (SEQ ID NO: 186) and Lip-S5D1-S6D1 (SEQ ID NO: 190).
 15. The method according to claim 11, wherein said one or more pharmaceutically acceptable carriers or excipients are selected from the group consisting of saline, buffered saline, dextrose, water, glycerol, ethanol and adjuvants.
 16. The method according to claim 15, wherein said buffered saline is phosphate buffered saline.
 17. The method according to claim 15, wherein said adjuvant is aluminium hydroxide.
 18. The method according to claim 11, wherein said pharmaceutical composition is a vaccine. 